BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1562 0.0
>3x_Contig1321
Length = 8217
Score = 1562 bits (788), Expect = 0.0
Identities = 819/828 (98%), Gaps = 1/828 (0%)
Strand = Plus / Plus
Query: 89 acatggaaaatttcttttgaggaaaaacatatcgtcaagttagggtaaccactggttgtc 148
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3720 acatggaaaatttcttttgaggaaaaacatatcgtcaagttacggtaaccactggttgtc 3779
Query: 149 aacatggaaactagttcggaatctctaagcaacatattaaatccaagatgagttgtgatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3780 aacatggaaactagttcggaatctctaagcaacatattaaatccaagatgagttgtgatt 3839
Query: 209 gagacattatttgagagacttgaaaataaagacagaattgagtagttagtcctctttcgt 268
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3840 gagacatgatttgagagacttgaaaataaagacagaattgagtagttagtcctctttcgt 3899
Query: 269 tacttattgcattcctcctataatattcggtgaattcttttggttgttcgcaccagttat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3900 tacttattgcattcctcctataatattcggtgaattcttttggttgttcgcaccagttat 3959
Query: 329 atttgatagaattgaactgtaccaagtgcagttttagaaaggcgaccgattagagacatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3960 atttgatagaattgaactgtaccaagtgcagttttagaaaggcgaccgattagagacatt 4019
Query: 389 tcaaccaatcagggagatggcttcgcttagacgatacatgcgtgttccgagagaactatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4020 tcaaccaatcagggagatggcttcgcttagacgatacatgcgtgttccgagagaactatt 4079
Query: 449 acccactgaaatcttcaaacaagagtctcagtcccctggtaaaataatcgttcagattat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4080 acccactgaaatcttcaaacaagagtctcagtcccctggtaaaataatcgttcagattat 4139
Query: 509 actcttgcaaatgttctattatctcactgcatcaactttgttttattgctgggcgaaaat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4140 actcttgcaaatgttctattatctcactgcatcaactttgttttattgctgggcgaaaat 4199
Query: 569 atgtgggtacgaaataaagctaaagcaatggttgtttacatggcaggacattgatttctc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200 atgtgggtacgaaataaagctaaagcaatggttgtttacatggcaggacattgatttctc 4259
Query: 629 aaactcttttggtatttctttatcagccctttggttaattgattccttgatttgtgtctt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4260 aaactcttttggtatttctttatcagccctttggttaattgattccttgatttgtgtctt 4319
Query: 689 ttttttgaccatcatagtgggaaggagtaaactcgcgtgggattttgccattacaatcca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4320 ttttttgaccatcatagtgggaaggagtaaactcgcgtgggattttgccattacaatcca 4379
Query: 749 tgctataaatctagtagtagtatggacacacacagggctattcccttcactagcatggtt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4380 tgctataaatctagtagtagtatggacacacacagggctattcccttcactagcatggtt 4439
Query: 809 tatcttgcaatttttgtctacactgatattgattttccttgggacttggattacccagtg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4440 tatcttgcaatttttgtctacactgatattgattttccttgggacttggattaccaggtg 4499
Query: 869 gagagaattgaaagacacatttttccgaagtatgggtggatgacgatt 916
|||||| |||||||||||||||||| | |||| ||||||||||||||
Sbjct: 4500 gagagagttgaaagacacatttttcgaaggtat-ggtggatgacgatt 4546
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6660
Number of Sequences: 1807
Number of extensions: 6660
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)