BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB02RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1386 0.0
>3x_Contig1665
Length = 15710
Score = 1386 bits (699), Expect = 0.0
Identities = 787/802 (98%), Gaps = 11/802 (1%)
Strand = Plus / Minus
Query: 47 tgggattactgtaacctttctgctgagcagccagttgaattttcaaaccatgctcgtcta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2813 tgggattactgtaacctttctgctgagcagccagttgaattttcaaaccatgctcgtcta 2754
Query: 107 caccggtcgtgaagcaagtatcctggccggcaagtttcttccatctattttgcacatcac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 caccggtcgtgaagcaagtatcctggccggcaagtttcttccatctattttgcacatcac 2694
Query: 167 acagtagactgctgtaaaggtgccctaaatgaggttttgcattgggataaaatattggag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2693 acagtagactgctgtaaaggtgccctaaatgaggttttgcattgggataaaatattggag 2634
Query: 227 tggtaatgtgaaatttcgataccgctcgtaccgctttagaagtcatacttggcaagtgaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2633 tggtaatgtgaaatttcgataccgctcgtaccgctttagaagtcatacttggcaagtgaa 2574
Query: 287 agagttgctagttgttgatttcgttctgcagtgtttattcttgtttgtcttttctcataa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2573 agagttgctagttgttgatttcgttctgcagtgtttattcttgtttgtcttttctcataa 2514
Query: 347 tgttcggtataaagatattttcagaggttttgttaaactaaaagtcagttttcctacgtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 tgttcggtataaagatattttcagaggttttgttaaactaaaagtcagttttcctacgtt 2454
Query: 407 agatattcgatcaagaaccttcacttaaattagaaaatgtgaacggttatggaggcatat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 agatattcgatcaagaaccttcacttaaattagaaaatgtgaacggttatggaggcatat 2394
Query: 467 atacttatttgattatgctaatacatccataaattagtacccatttgctggaatatctcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 atacttatttgattatgctaatacatccataaattagtacccatttgctggaatatctcc 2334
Query: 527 caacaaaagtgttaaatataattatttagtgaacaaactgacaacgtcctcatcttggat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 caacaaaagtgttaaatataattatttagtgaacaaactgacaacgtcctcatcttggat 2274
Query: 587 tttatgatttagcccacatttctgtggggaatgcttagccgatgaaccccatactaaagc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2273 tttatgatttagcccacatttctgtggggaatgcttagccgatgaaccccatactaaggc 2214
Query: 647 gtacttgaatttatctttaaaaatctctgtgaatattgtggcaaagatcacctatggagc 706
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 gtacttgaatttatcttt-aaaatctctgtgaatattgtggcaaagatcacctatggagc 2155
Query: 707 tgttactnctaaacaccaatggggtctgagaaaatct-gctttatacccacgcttctttg 765
||||||| |||| |||||| ||||||||| |||||| |||||||| |||||||||||||
Sbjct: 2154 tgttactcctaacaaccaat-gggtctgag-aaatctggctttata-ccacgcttctttg 2098
Query: 766 tatatacacgngttcaaatttaattngatacccagatttcatctacccacgtcatccaat 825
|||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 2097 tatatacacg-gttcaaatttaatt-gata-ccagatttcatcta-ccacgtcatccaat 2042
Query: 826 cctaaagtcattcctcacatga 847
||| |||||| |||||||||||
Sbjct: 2041 cct-aagtca-tcctcacatga 2022
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6336
Number of Sequences: 1807
Number of extensions: 6336
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)