BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB03FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1564 0.0
>3x_Contig1748
Length = 22566
Score = 1564 bits (789), Expect = 0.0
Identities = 854/870 (98%), Gaps = 5/870 (0%)
Strand = Plus / Plus
Query: 88 aacaactagtctactgtttgatacaactattaatcaccattttcagagaatcgacaatca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 aacaactagtctactgtttgatacaactattaatcaccattttcagagaatcgacaatca 3208
Query: 148 gttgcttgtttgtggttgagaaagattcaattaaaggtcaagacattaacagggaaggaa 207
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3209 gttgcttgtttgtggttgagaaagatgcaattaaaggtcaagacattaacagggaaggaa 3268
Query: 208 atctccgtatangttaatagtt-agaaacggtctatcatatcaaagagctattagaagaa 266
||||||||| | ||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3269 atctccgtagatgttcaaagttcagaaacggtctatcatatcaaagagctattagaagaa 3328
Query: 267 aaagagggtattccaccatcacagcagaagttgatcttccagggcaaacaaatgtatgtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 aaagagggtattccaccatcacagcagaagttgatcttccagggcaaacaaatgtatgtt 3388
Query: 327 aattaactgataattcagaactgagaagagtttgatatcaaattaatgtagggactcttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 aattaactgataattcagaactgagaagagtttgatatcaaattaatgtagggactcttt 3448
Query: 387 tactaactagtaagtaatgctatctttaaatcagagatgataacgcaacaatcggcagtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3449 tactaactagtaagtaatgctatctttaaatcagagatgataacgcaacaatcggcagtg 3508
Query: 447 ccgacttgcaagatggatctcttttacatcttgttctaactttaagaggcggttgttgag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3509 ccgacttgcaagatggatctcttttacatcttgttctaactttaagaggcggttgttgag 3568
Query: 507 agccatgtgtcattgcattgcgaaacctcaagatacgtatgtgtataagtattttgcaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3569 agccatgtgtcattgcattgcgaaacctcaagatacgtatgtgtataagtattttgcaga 3628
Query: 567 taaatacctggaggaattactctgcatttaataaaacgactataattattggaagctaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3629 taaatacctggaggaattactctgcatttaataaaacgactataattattggaagctaac 3688
Query: 627 actatgaatgacataatttacatttacacgaccgtccaattatcaaacaaaggaaggatg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3689 actatgaatgacataatttacatttacacgaccgtccaattatcaaacaaaggaaggatg 3748
Query: 687 taacacatgcttgttgcttttccttgtatgcatgaatgaaccttataaatacataatgat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3749 taacacatgcttgttgcttttccttgtatgcatgaatgaaccttataaatacataatgat 3808
Query: 747 tcagatatcaaatttagtgcgaacattantattgtagaaacagatgaacttaacgacaac 806
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3809 tcagatatcaaatttagtgcgaacattataattgtagaaacagatgaacttaacgacaac 3868
Query: 807 gatgcaaacaaaagtaagaaaaacacggatttacttacctgactatactgtaacatgggt 866
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 3869 gatgcaaacaaaagtaagaaaaacacgga-taacttacctgactatactgtaacatgggt 3927
Query: 867 gacaatagtttattccatgaagccatcactgncgataatattttgaa-gatgccttta-c 924
||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct: 3928 gacaatagtttatccaatgaagccatcactgccgataatattttgaaggatgcctttagc 3987
Query: 925 caaaagaagcaga-tgcagctactacgaag 953
||||||||||||| ||||||||||||||||
Sbjct: 3988 caaaagaagcagattgcagctactacgaag 4017
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7161
Number of Sequences: 1807
Number of extensions: 7161
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)