BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZB03RM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1220                                                        1116   0.0  

>3x_Contig1220 
          Length = 4729

 Score = 1116 bits (563), Expect = 0.0
 Identities = 668/693 (96%), Gaps = 9/693 (1%)
 Strand = Plus / Minus

                                                                        
Query: 50   tggtgtaccgtccgcattccaggtttcgaaatacctataattcaaatgggtggttggcgc 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4258 tggtgtaccgtccgcattccaggtttcgaaatacctataattcaaatgggtggttggcgc 4199

                                                                        
Query: 110  atgtggattaattggatgaataaccatagagagaccacaggcgaagaattttactcctgt 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 atgtggattaattggatgaataaccatagagagaccacaggcgaagaattttactcctgt 4139

                                                                        
Query: 170  tgcatctggttcaccagttgcaggatcaataggcagatgcaaatttttgtggtccgcttt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 tgcatctggttcaccagttgcaggatcaataggcagatgcaaatttttgtggtccgcttt 4079

                                                                        
Query: 230  catagccttgatagcaggtggactcaagttcccatgaaccacactgacattaacaccacc 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 catagccttgatagcaggtggactcaagttcccatgaaccacactgacattaacaccacc 4019

                                                                        
Query: 290  tttctcaaacgtagtaccattctgcaacaccatcgagacaccgccaccaccgttgttgcc 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tttctcaaacgtagtaccattctgcaacaccatcgagacaccgccaccaccgttgttgcc 3959

                                                                        
Query: 350  acgatcccaagaatcggcttgaaactttacagtatccaaagtttccagacccttggtaat 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 acgatcccaagaatcggcttgaaactttacagtatccaaagtttccagacccttggtaat 3899

                                                                        
Query: 410  ttcttgctgtttccggcgcactaaggcctccattctctctctaattggcacttgtgaatc 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 ttcttgctgtttccggcgcactaaggcctccattctctctctaattggcacttgtgaatc 3839

                                                                        
Query: 470  tgtcatcgcacaatgataatatttagaatgtgtgttaagatgaaccggtcgttgagtttc 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3838 tgtcatcgcacaatgataatatttagaatgtgtgttaagatgaaccggtcgttgagtttc 3779

                                                                        
Query: 530  tgtttgctttaccagacaagtatactggatgtaaag-tttatcaatgattctgcttgatt 588
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3778 tgtttgctttaccagacaagtatactggatgtaaagttttatcaatgattctgcttgatt 3719

                                                                        
Query: 589  ggagagaaaa-ggcagtatagat-caatgc-tnttttctta-ttcagttggtgagtcgaa 644
            |||||||||| |||||||||||| |||||| | | |||| | ||||||||||||||||||
Sbjct: 3718 ggagagaaaagggcagtatagatccaatgcttctcttctcatttcagttggtgagtcgaa 3659

                                                                        
Query: 645  tggaat-atttactttcgttattttggcc--aaaaaaaaaatcc-aaaagcaagcggact 700
            |||||| ||| |||||||||| | | | |  ||||||||||||| |||||||||| ||||
Sbjct: 3658 tggaataattcactttcgttaatatagtcaaaaaaaaaaaatccaaaaagcaagcagact 3599

                                             
Query: 701  ttagaattcaaacctggggattatttggttaaa 733
            | |  ||||| |||||| ||| |||||| ||||
Sbjct: 3598 tcaagattcagacctggtgataatttggataaa 3566


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8745
Number of Sequences: 1807
Number of extensions: 8745
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)