BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB04FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1390 0.0
>3x_Contig1605
Length = 12373
Score = 1390 bits (701), Expect = 0.0
Identities = 794/817 (97%), Gaps = 6/817 (0%)
Strand = Plus / Minus
Query: 84 ccaggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10445 ccaggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttt 10386
Query: 144 tgtatcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10385 tgtatcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtc 10326
Query: 204 ttcctcttctatgattccgtataatagatggtatgttaaaggaactcctttttcaaccat 263
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10325 ttcctcttctaggattccgtataatagatggtatgttaaaggaactcctctttcaaccat 10266
Query: 264 tttctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttcca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10265 tttctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttcca 10206
Query: 324 agttatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10205 agttatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttc 10146
Query: 384 gcgatatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10145 gcgatatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaa 10086
Query: 444 attataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctct 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10085 attataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctct 10026
Query: 504 gcaggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10025 gcaggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagc 9966
Query: 564 cgttttcaatggcgcaattcgtaaattagaaggatgtatcaaattcttaagaactttcgg 623
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 9965 cgttttcaatggcgcaattcgtaaattagaaggatgtagcaaattcttaagaagtttcgg 9906
Query: 624 tattattccgtcttgtaaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtcc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9905 tattattccgtcttgtaaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtcc 9846
Query: 684 aatatagtcttccaactcttgaatatcgcttagtacttcttctgttattttgggaa-ttc 742
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9845 aatatagtcttcgaactcttgaatatcgcttagtacttcttctgttattttgggaatttc 9786
Query: 743 agtgaaacattcgctttcaaagatacgctttttagcgaccagaggaacattatccttcag 802
|||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| ||||
Sbjct: 9785 agtgaaacattccctttcaaagaaacgctttttagcgacaagagaaacattatcc-tcag 9727
Query: 803 ag-cttgaaaaagactatcaataag-ttagccacatcttcactggaatatgga-aatatt 859
|| |||||||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||
Sbjct: 9726 agacttgaaaaagactagaaataagtttagcaacatcttcactgg-atatggagaatatt 9668
Query: 860 cttttcggtgcctcttgaattttcaaagttcttttta 896
|||| |||| |||||| ||||||||||||||||||
Sbjct: 9667 ctttcgtgtgcgtcttgagttttcaaagttcttttta 9631
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7718
Number of Sequences: 1807
Number of extensions: 7718
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)