BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB04RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1183 0.0
>3x_Contig1798
Length = 38968
Score = 1183 bits (597), Expect = 0.0
Identities = 616/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 48 tttggttaactgctcttctatggctaccttcaacttgtccaaatttacaattatgcatcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25763 tttggttaactgctcttctatggctaccttcaacttgtccaaatttacaattatgcatcc 25704
Query: 108 gaaccaatgataattcatattcactggaactacgacgtatttcttggaaaacagatctga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25703 gaaccaatgataattcatattcactggaactacgacgtatttcttggaaaacagatctga 25644
Query: 168 gttaattacccatttctttacgttttcatatttgcttgcttctgtacttacaagcttagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25643 gttaattacccatttctttacgttttcatatttgcttgcttctgtacttacaagcttagt 25584
Query: 228 gtagaagaaagaagaaaataagtagacttcggatcgcgatattacgttgtcgcttatcga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25583 gtagaagaaagaagaaaataagtagacttcggatcgcgatattacgttgtcgcttatcga 25524
Query: 288 ttcttcaatataaaactttaggaaaaagtccaaaattgtatcatttatccaatcattatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25523 ttcttcaatataaaactttaggaaaaagtccaaaattgtatcatttatccaatcattatt 25464
Query: 348 gtacaaacatttgaagtcctggttagttaccgagagtttggaaccatcattgaaagtata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25463 gtacaaacatttgaagtcctggttagttaccgagagtttggaaccatcattgaaagtata 25404
Query: 408 agataaggtgggttcaaataactccgggttttcactttccatgagttcatcagatgtatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25403 agataaggtgggttcaaataactccgggttttcactttccatgagttcatcagatgtatg 25344
Query: 468 atgtacatcgccatgttttttgttatcagatatggaccttgtgacacgcctcaaattaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25343 atgtacatcgccatgttttttgttatcagatatggaccttgtgacacgcctcaaattaga 25284
Query: 528 aacgtaagaaatgaatggtggatgttcagtggttttttcagaagtagactgattcccata 587
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 25283 aacgtaagaaatgaatggtggatgttcagtggttttttcagaggtagactgattcccata 25224
Query: 588 gaaactctcttgcgatactgtctcgtctggcgtttggttctgatatgaagtcagcggntt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 25223 gaaactctcttgcgatactgtctcgtctggcgtttggttctgatatgaagtcagcgg-tt 25165
Query: 648 tggattcgggaaactgtataa 668
|| | ||||||| ||||||||
Sbjct: 25164 tgtagtcgggaagctgtataa 25144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8232
Number of Sequences: 1807
Number of extensions: 8232
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)