BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB06FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig373 1231 0.0
>3x_Contig373
Length = 2255
Score = 1231 bits (621), Expect = 0.0
Identities = 668/684 (97%)
Strand = Plus / Plus
Query: 85 gagtaaattgaaacccaatggagttatcttcttaagcactataaacagagacccaatctc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 gagtaaattgaaacccaatggagttatcttcttaagcactataaacagagacccaatctc 1530
Query: 145 atggtttaccaccatattcatgggagagcagatattaaaagtagttccaaaaggaactca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 atggtttaccaccatattcatgggagagcagatattaaaagtagttccaaaaggaactca 1590
Query: 205 tcacgttgaaaagtacatcaactcatcagagatcaaacaatggtttgaagataatgtaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 tcacgttgaaaagtacatcaactcatcagagatcaaacaatggtttgaagataatgtaca 1650
Query: 265 aggaagatatgaaattttagacactaaaggaaccatgtatctacctttgaccggttgggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 aggaagatatgaaattttagacactaaaggaaccatgtatctacctttgaccggttgggt 1710
Query: 325 ggaacacgactgcactaacatcggaaactactttatggcaatcaaaaaattgaactaatt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 ggaacacgactgcactaacatcggaaactactttatggcaatcaaaaaattgaactaatt 1770
Query: 385 attggcatcatatgtactgatacgaaacttatgacattttgaacgttaattctaagacat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 attggcatcatatgtactgatacgaaacttatgacattttgaacgttaattctaagacat 1830
Query: 445 taatcggtgacgagtatgaaaagcttttatacccgttgagttagtgaattgttcctggac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 taatcggtgacgagtatgaaaagcttttatacccgttgagttagtgaattgttcctggac 1890
Query: 505 aaacggagtatatacattgacgaattatatatacgcacgtaatatgatggttaattagct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 aaacggagtatatacattgacgaattatatatacgcacgtaatatgatggttaattagct 1950
Query: 565 gtttctaacgcaggcgggttttctaaaggttcatcatcaacaaattgcggcatagcgtta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 gtttctaacgcaggcgggttttctaaaggttcatcatcaacaaattgcggcatagcgtta 2010
Query: 625 ttcaaatatgatggtaattctcccgtagtttctgaatcattcaagttcaattcttccaag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2011 ttcaaatatgatggtaattctcccgtagtttctgaatcattcaagttcaattcttgcaag 2070
Query: 685 taatcttcttctccaagagcttctaactctgcatctaattcgctttcacttatgtcatca 744
|||||| || || |||||||| ||| | ||||| ||||| ||||| | ||||| || ||
Sbjct: 2071 taatctgctgctgcaagagctgctagcgctgcagctaatgcgcttgcgcttattgcagca 2130
Query: 745 atatcttgattntgcattgcgagc 768
||||||| ||| ||||||||||||
Sbjct: 2131 atatctttattttgcattgcgagc 2154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7320
Number of Sequences: 1807
Number of extensions: 7320
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)