BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB06RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1783 688 0.0
3x_Contig1560 599 e-171
>3x_Contig1783
Length = 22123
Score = 688 bits (347), Expect = 0.0
Identities = 422/438 (96%), Gaps = 7/438 (1%)
Strand = Plus / Minus
Query: 412 gtgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 gtgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcga 2276
Query: 472 gtatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 gtatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatc 2216
Query: 532 tttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 tttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttg 2156
Query: 592 tctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgat 2096
Query: 652 gctttatcctc-gcatagcagaccgatttcgtgataaacgccaacattgcgttccaggaa 710
|| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 2095 gc-ttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccagg-a 2038
Query: 711 aaagctt-agaggttgggtgaaa-tagac-atatagttacagatatggggatagtgatga 767
||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 2037 aaagcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatga 1978
Query: 768 agtataagaaagttgtattagtaggaattagcactggatattggnctaattatcaaatag 827
|||||||||||||||||| |||| ||||||||||| ||||| | |||||||||||||||
Sbjct: 1977 agtataagaaagttgtataggtagaaattagcactgtatatt-gtctaattatcaaatag 1919
Query: 828 acccgagcttttttagct 845
||||||||| ||||||||
Sbjct: 1918 acccgagctattttagct 1901
>3x_Contig1560
Length = 9209
Score = 599 bits (302), Expect = e-171
Identities = 353/362 (97%), Gaps = 6/362 (1%)
Strand = Plus / Minus
Query: 413 tgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcgag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8675 tgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcgag 8616
Query: 473 tatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 tatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatct 8556
Query: 533 ttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttgt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 ttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttgt 8496
Query: 593 ctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgatg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 ctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgatg 8436
Query: 653 ctttatcctc-gcatagcagaccgatttcgtgataaacgccaacattgcgttccaggaaa 711
| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 8435 c-ttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccagg-aa 8378
Query: 712 aagctt-agaggttgggtgaaa-tagac-atatagttacagatatggggatagtgatgaa 768
|||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct: 8377 aagcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaa 8318
Query: 769 gt 770
||
Sbjct: 8317 gt 8316
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8329
Number of Sequences: 1807
Number of extensions: 8329
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)