BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZB07FM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1301                                                        1382   0.0  

>3x_Contig1301 
          Length = 6951

 Score = 1382 bits (697), Expect = 0.0
 Identities = 787/810 (97%), Gaps = 6/810 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   ttatccccgattgctccattgatattattggtgacagtttaagtcaataggattgtagtc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 ttatccccgattgctccattgatattattggtgacagtttaagtcaataggattgtagtc 1452

                                                                        
Query: 146  ttgacatgtttggatactatgaggtcctcactaaacaacaatggtagcaaaaagcaacaa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 ttgacatgtttggatactatgaggtcctcactaaacaacaatggtagcaaaaagcaacaa 1392

                                                                        
Query: 206  agtattaagacataagttgttgtgatatatatatatgatttaagaccttttattactgag 265
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 agtattaagacaaaagttgttgtgatatatatatatgatttaagaccttttattactgag 1332

                                                                        
Query: 266  tatctttaagaaggttttggctgtaggtgttgacactttagctgcatccttaacactatt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 tatctttaagaaggttttggctgtaggtgttgacactttagctgcatccttaacactatt 1272

                                                                        
Query: 326  tttgttgaagtaacagtaacaaatgcattgtcattaaggactggtaatctggagtcctga 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tttgttgaagtaacagtaacaaatgcattgtcattaaggactggtaatctggagtcctga 1212

                                                                        
Query: 386  tgtatcaaatagagggaagcattttcaatatataattcggaagtcgggcagtgcatcgtc 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 tgtatcaaatagagggaagcattttcaatatataattcggaagtcgggcagtgcatcgtc 1152

                                                                        
Query: 446  tctgatatttagaatggttgttacatttcagctgcaaatgctaatcttttcatgtatcat 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 tctgatatttagaatggttgttacatttcagctgcaaatgctaatcttttcatgtatcat 1092

                                                                        
Query: 506  ttgaaaccttttcattgtaagaagtctttcaaataagcaccaacagctcacaaatgctgc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 ttgaaaccttttcattgtaagaagtctttcaaataagcaccaacagctcacaaatgctgc 1032

                                                                        
Query: 566  aaaaccttcatatcttttgctcaagcattttaaaagtcctatagtgtccccagttgtgat 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 aaaaccttcatatcttttgctcaagcattttaaaagtcctatagtgtccccagttgtgat 972

                                                                        
Query: 626  caagggtttttgttactttcagtaccagatgctaaagggac-ttgactangttttgacgc 684
            |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct: 971  caagggtttttgttactttcagtaccagatgctaaaaggactttgactaggttttgacgc 912

                                                                        
Query: 685  tttcttttancgtttga-gaatattatatatatcaataattgcttgctgaaatac-ttac 742
            |||| |||| ||||||| ||||||   |||||||||||||||||||||||||||| ||||
Sbjct: 911  tttc-tttagcgtttgaggaatatataatatatcaataattgcttgctgaaatactttac 853

                                                                        
Query: 743  tggaatttggtattattatttgactatatattgcttttgaatagcatttaagaatacgat 802
            ||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 852  tgg-atttggtattattatttgactatatatgctttttgaatagcatttaagaatacgat 794

                                                                        
Query: 803  tatgccantgtcatgcctaaatgaaattttccttccaattcgtgtccgttatattaaaac 862
             |||||| |||||||| |||||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 793  aatgccagtgtcatgcttaaatgaaattttcctccaaattcgtgtccgttata-taaaac 735

                                          
Query: 863  gataaaccactttgtaatagaaaaattgta 892
            ||||||||||| ||||||||||||| ||||
Sbjct: 734  gataaaccactctgtaatagaaaaaatgta 705


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9816
Number of Sequences: 1807
Number of extensions: 9816
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)