BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB07RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1209 0.0
3x_Contig1762 100 9e-21
3x_Contig1623 100 9e-21
3x_Contig17 100 9e-21
>3x_Contig1487
Length = 9002
Score = 1209 bits (610), Expect = 0.0
Identities = 695/714 (97%), Gaps = 7/714 (0%)
Strand = Plus / Plus
Query: 49 cgctaggctattaacccaaagcgagaatcataccactagaccacacgcccatataaaatt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5403 cgctaggctattaacccaaagcgagaatcataccactagaccacacgcccatataaaatt 5462
Query: 109 agttggatgttaagaagagaagtgattgatgtattccaaatgcaaagtcatagtattttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5463 agttggatgttaagaagagaagtgattgatgtattccaaatgcaaagtcatagtattttt 5522
Query: 169 ttccaaacagccttggctgatacaggcactacagcactgaaagcataacaaatattatgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5523 ttccaaacagccttggctgatacaggcactacagcactgaaagcataacaaatattatgt 5582
Query: 229 gtactcctatgttcggtaccaatccgataatgtcgagatgcatacagggtacctagatgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5583 gtactcctatgttcggtaccaatccgataatgtcgagatgcatacagggtacctagatgc 5642
Query: 289 acagccttctgtaaatatctgacacatatatatatataaatatgtatatgtgtcagatat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5643 acagccttctgtaaatatctgacacatatatatatataaatatgtatatgtgtcagatat 5702
Query: 349 tccgtcattggggggatacatattaaaaactctggacaactggtagcagcccagagaaca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5703 tccgtcattggggggatacatattaaaaactctggacaactggtagcagcccagagaaca 5762
Query: 409 caatgaagtatctgcttttactactactattactgtcctccatatgcacctgtaccccga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5763 caatgaagtatctgcttttactactactattactgtcctccatatgcacctgtaccccga 5822
Query: 469 tactacctggcccctgccccaatgcaacttctatcctgtatccgatctctaataag-att 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5823 tactacctggcccctgccccaatgcaacttctatcctgtatccgatctctaataagaatt 5882
Query: 528 cttgaattc-atctctcatcgagagggtacttgtggccatagaaaaagaaacagaaacta 586
|| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5883 ctcgaattcaatctctcatcgagagggtacttgtggccatagaaaaggaaacagaaacta 5942
Query: 587 atactacctcgacgacctcaatttgacccacgacatgcgacgaagttacttggtataatg 646
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 5943 atactacctcgacgacctcaattgaacccacgacatgcgacgaagtaacttggtataatg 6002
Query: 647 tcgtatatcatgggattatttggagagaagccggttttgcactgaagtggtaagaactgc 706
||||||||||| |||||||||||||||||| ||||| |||||||| || |||||| ||||
Sbjct: 6003 tcgtatatcat-ggattatttggagagaag-cggttctgcactgatgt-gtaagacctgc 6059
Query: 707 ctggccaattcaccagaacatgaattcttttcaataatatgaaataataataat 760
|| |||||| ||||||| ||||| |||||| |||||||||| ||||||||||||
Sbjct: 6060 ct-gccaatacaccagagcatgatttctttccaataatatg-aataataataat 6111
>3x_Contig1762
Length = 22098
Score = 99.6 bits (50), Expect = 9e-21
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 49 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 98
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6159 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 6110
>3x_Contig1623
Length = 14379
Score = 99.6 bits (50), Expect = 9e-21
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 49 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 98
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7079 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 7128
>3x_Contig17
Length = 819
Score = 99.6 bits (50), Expect = 9e-21
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 49 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 98
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 258
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,510
Number of Sequences: 1807
Number of extensions: 17510
Number of successful extensions: 672
Number of sequences better than 1.0e-20: 4
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)