BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB08FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1561 1544 0.0
>3x_Contig1561
Length = 10959
Score = 1544 bits (779), Expect = 0.0
Identities = 823/833 (98%), Gaps = 4/833 (0%)
Strand = Plus / Plus
Query: 86 tagaacgttgtaaaatattcaaatcaactttaaccttctcgtcatcgagagattccaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tagaacgttgtaaaatattcaaatcaactttaaccttctcgtcatcgagagattccaaaa 584
Query: 146 ggggcaaagtcctgtataaatcagcatttttggagttaagcctacagcggtaaaattctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggggcaaagtcctgtataaatcagcatttttggagttaagcctacagcggtaaaattctt 644
Query: 206 tagccactgccttaagtttctcaacaaactttgagcccgaagctgaagatctctccaatt 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagccactgcctcaagtttctcaacaaactttgagcccgaagctgaagatctctccaatt 704
Query: 266 cttgattaagcctgtcatgtgtcaatgaggtgtttggcttgacacgagtctcgcctatcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttgattaagcctgtcatgtgtcaatgaggtgtttggcttgacacgagtctcgcctatcc 764
Query: 326 acgttgtaacaatatcaaagttttcaggcttcagttcatatattatactgacagtgtttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acgttgtaacaatatcaaagttttcaggcttcagttcatatattatactgacagtgtttg 824
Query: 386 acagtttctcgggctgcaaacttaagaattcattcagagcggctggaagcaaaccaacag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 acagtttctcgggctgcaaacttaagaattcattcagagcggctggaagcaaaccaacag 884
Query: 446 tcttctgtggcatgaagacagcgctagatcttttcctagctcttctatccaaagatgaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcttctgtggcatgaagacagcgctagatcttttcctagctcttctatccaaagatgaac 944
Query: 506 cttcttcaatatggactgttacatcaacaacatgaaatcctaattcaaggttaccgttgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 cttcttcaatatggactgttacatcaacaacatgaaatcctaattcaaggttaccgttgt 1004
Query: 566 cagtgtctcttaaatggaccgcataatcagaaacttcaccagtttctgaaatggcaatga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cagtgtctcttaaatggaccgcataatcagaaacttcaccagtttctgaaatggcaatga 1064
Query: 626 cattttcataagtacgccttgttttgctttgctcttctgaaagcaatacaggtgcaaaac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cattttcataagtacgccttgttttgctttgctcttctgaaagcaatacaggtgcaaaac 1124
Query: 686 tatctctctcctttgtacggtcctgagggtctaaatattcatcacttaagaaattattgt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 tatctctctcctttgtacggtcctgagggtctaaatattcatcacttaagaaattattgt 1184
Query: 746 ctctcanaattgaatcaatctcagtnttttggatcgttcacatcgccttattgcgagaca 805
|||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1185 ctctcaaaattgaatcaatctcagt-ttttggatcgttcacatcgcctaattgcgagaca 1243
Query: 806 agagtaccaaaaggatgcaaagaagtgattggccagcgcttgatgcttagc-acgaaaac 864
||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 1244 agagtaccaaagggatgcaaagaagtgattggccagcgcttgatgc-tagcaacgaaaac 1302
Query: 865 tttattcagatacttatcagcattttcgacgaaatcccttagncgcctgttct 917
||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 1303 tttattcagatacttatcagcattttcgacgaagt-ccttaggcgcctgttct 1354
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6160
Number of Sequences: 1807
Number of extensions: 6160
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)