BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZB08RM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig918                                                         1195   0.0  

>3x_Contig918 
          Length = 2482

 Score = 1195 bits (603), Expect = 0.0
 Identities = 640/649 (98%), Gaps = 3/649 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   caagtacggccaatacttcgatgtacatacctgctggtttgactccgccggtcttattgg 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 caagtacggccaatacttcgatgtacatacctgctggtttgactccgccggtcttattgg 1895

                                                                        
Query: 106  ctattaatctggattttacagcaccaatcgcaatttccccgtaatatgctagctgtgcat 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 ctattaatctggattttacagcaccaatcgcaatttccccgtaatatgctagctgtgcat 1955

                                                                        
Query: 166  agaatactcctttcgcattcttgtccacaacttcctcgaagtattcacctggatactgaa 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 agaatactcctttcgcattcttgtccacaacttcctcgaagtattcacctggatactgaa 2015

                                                                        
Query: 226  ccggtagcacaacatcaatgatctttctgaatgttcctaaattgttagcgtaaacgttat 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 ccggtagcacaacatcaatgatctttctgaatgttcctaaattgttagcgtaaacgttat 2075

                                                                        
Query: 286  caatcgtaaccaatgctctacccatcttctcaattgtctatatatggataccttacctgc 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2076 caatcgtaaccaatgctctacccatcttctcaattgtctatatatggataccttacctgc 2135

                                                                        
Query: 346  tgattctcaacgtacagaaagtactggtttctagcagtaattcttgtcattgtatctctc 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 tgattctcaacgtacagaaagtactggtttctagcagtaattcttgtcattgtatctctc 2195

                                                                        
Query: 406  ttgaagatattatttcttcggattataagttctatggaattttcaaatcaactgtgtatc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 ttgaagatattatttcttcggattataagttctatggaattttcaaatcaactgtgtatc 2255

                                                                        
Query: 466  tcaggatcgaaacagcgaacaatgttaaaatcgagagtgtaataccagataccagcctta 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 tcaggatcgaaacagcgaacaatgttaaaatcgagagtgtaataccagataccagcctta 2315

                                                                        
Query: 526  gatacactgttagaatttcctctaaactgccaaaacaacgaaaccaatctaacatcgatg 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 gatacactgttagaatttcctctaaactgccaaaacaacgaaaccaatctaacatcgatg 2375

                                                                        
Query: 586  ctcaaatgcataaactatncataacggacattccataccacttatttnncaactagc-aa 644
            ||||||||||||||||||    |||||||||||||||||||||||||  |||||||| ||
Sbjct: 2376 ctcaaatgcataaactatcataaacggacattccataccacttattt-ccaactagcaaa 2434

                                                             
Query: 645  gggaaatgtgtcttgggatatggcaattggatcccgctatacccaaaga 693
            |||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 2435 gggaaatgtgtcttggaatatggc-attggatcccgctatacccaaaga 2482


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5841
Number of Sequences: 1807
Number of extensions: 5841
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)