BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB09FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 1610 0.0
>3x_Contig1467
Length = 7717
Score = 1610 bits (812), Expect = 0.0
Identities = 860/875 (98%), Gaps = 2/875 (0%)
Strand = Plus / Plus
Query: 89 aaagatgttagtaaatttttctttcgtttgattgccgttaattagcttttgcttgtactt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 aaagatgttagtaaatttttctttcgtttgattgccgttaattagcttttgcttgtactt 3275
Query: 149 tcacagagtagttatataagataacttcagatgccaccaacgatgttttctctttgagtt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3276 tcacagagtagttatataagataacttcagatgccaccaacgatgttttctctttgagtt 3335
Query: 209 aattactttttttataatttcgccttcttggttgtatactatcccgtacttcccaccttc 268
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 aattacttcacaaataatttcgccttcttggttgtatactatcccgtacttcccaccttc 3395
Query: 269 gatattagaaagccgcttctttactcgtatgaatctcctcagttcgctagttttttgcta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3396 gatattagaaagccgcttctttactcgtatgaatctcctcagttcgctagttttttgcta 3455
Query: 329 caccataacggacttcccactgattattccttggtaactgtcattcaccctcagtgatct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3456 caccataacggacttcccactgattattccttggtaactgtcattcaccctcagtgatct 3515
Query: 389 aaaacattttctaattcattccatcaattcaaaactctttcaaatatatctaaacatgta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3516 aaaacattttctaattcattccatcaattcaaaactctttcaaatatatctaaacatgta 3575
Query: 449 atcgcactgttctctcattgtattgcatccgctggttactccacaaagcacaatagtacc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3576 atcgcactgttctctcattgtattgcatccgctggttactccacaaagcacaatagtacc 3635
Query: 509 cacgtataaaacatactatttgacctggcttcttgacctcttcttgtatttcaagaacta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3636 cacgtataaaacatactatttgacctggcttcttgacctcttcttgtatttcaagaacta 3695
Query: 569 tccaatacaataactatagaaggtaacagtatataacagtatacaacaattttgtaactt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 tccaatacaataactatagaaggtaacagtatataacagtatacaacaattttgtaactt 3755
Query: 629 ttcactagatggaaatcaaagttgttctttcgacaaaatggaccacactgccgagtattg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 ttcactagatggaaatcaaagttgttctttcgacaaaatggaccacactgccgagtattg 3815
Query: 689 gactgccagagggaaccagctcgcccagagaaagggacagagaaagcgtgagaatggcca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3816 gactgccagagggaaccagctcgcccagagaaagggacagagaaagcgtgagaatggcca 3875
Query: 749 aaggtgagctggaggagagactcctgnggaaagattctgcctnagtggtagatggaatgt 808
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 3876 aaggtgagctggaggagagactcctggggaaagattctgcctaggtggtagatggaatgt 3935
Query: 809 tgctctctgggcagacgggcagggatatcgacggcagccagaaactgaatgagtggtgtg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3936 tgctctctgggcagacgggcagggatatcgacggcagccagaaactgaatgagtggtgtg 3995
Query: 869 ggccagagcattctgaggccagnaggggtttacacccggtagtgagtggcttgggacggc 928
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 3996 ggccagagcattctgaggccagagggggtttaca-ccggtagtgagtggcttgggacggc 4054
Query: 929 ctgnctaacc-ttatggtnattgtctgttttaaaa 962
||| |||||| ||||||| |||||||||||||||
Sbjct: 4055 ctggctaaccattatggtatttgtctgttttaaaa 4089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5739
Number of Sequences: 1807
Number of extensions: 5739
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)