BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB09RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 1431 0.0
>3x_Contig1457
Length = 7441
Score = 1431 bits (722), Expect = 0.0
Identities = 841/866 (97%), Gaps = 13/866 (1%)
Strand = Plus / Minus
Query: 48 aaggcttcgtcatcacctgtcgatacctatatatgtaagtattagtggactcttctatat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 aaggcttcgtcatcacctgtcgatacctatatatgtaagtattagtggactcttctatat 1686
Query: 108 ggtatgcacaacaccatccatcatcaggaatatcaatttaataccctattggaaatcctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 ggtatgcacaacaccatccatcatcaggaatatcaatttaataccctattggaaatcctc 1626
Query: 168 gcatattattgcctcaattgcatatgaaaggtgtttccctttcgaatcttatcagtgccg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 gcatattattgcctcaattgcatatgaaaggtgtttccctttcgaatcttatcagtgccg 1566
Query: 228 gtacaaaatatacaacaatgggaaatcacgctttcagcttagtttatttatactcaataa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 gtacaaaatatacaacaatgggaaatcacgctttcagcttagtttatttatactcaataa 1506
Query: 288 aaaccctacgcagaagcacaccttatgtataaatttacaaaaacatttcaaaagggatcg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 aaaccctacgcagaagcacaccttatgtataaatttacaaaaacatttcaaaagggatcg 1446
Query: 348 cctcccgcattgcagctctctcatgttctaaagcacaaccttggttccaacctcgaaatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 cctcccgcattgcagctctctcatgttctaaagcacaaccttggttccaacctcgaaatg 1386
Query: 408 tgtcacctcccaccaatcttattcgatgtaaacccagtactggcagctttttcaaatttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 tgtcacctcccaccaatcttattcgatgtaaacccagtactggcagctttttcaaatttt 1326
Query: 468 gcagtttctaggcagaaagaaattttaagaaaagttttaaaaatgagaaaacacgatata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 gcagtttctaggcagaaagaaattttaagaaaagttttaaaaatgagaaaacacgatata 1266
Query: 528 tgttttttgttttgcgagaactgaacaaagggggtcgaaaggctgagtccttaacagctg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tgttttttgttttgcgagaactgaacaaagggggtcgaaaggctgagtccttaacagctg 1206
Query: 588 atatcagaactatctggaagtaaaattttgcgtacaagtattacaagtattgacttttta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 atatcagaactatctggaagtaaaattttgcgtacaagtattacaagtattgacttttta 1146
Query: 648 cttatatcagtggaaagattcagtttttcaagtaaatttcccgcttttatcangaanaag 707
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct: 1145 cttatatcagtggaaagattcagtttttcaggtaaatttcccgcttttatcaggaaaaag 1086
Query: 708 tgagacatttacaat-agcatttgtttct-aaatagaacgtg-tgcacctgctgntcatc 764
||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||| |||||
Sbjct: 1085 tgagaca-ttacaataagcatttgtttctaaaatag-acgtgttgcacctgctgttcatc 1028
Query: 765 ggtttttt-agagct-ccaaacgcatatc-atttttttgtcgtcccatctataacct--c 819
|||||||| |||||| | ||||||||||| ||||||||||||||||||||| ||||
Sbjct: 1027 ggttttttaagagctacgaaacgcatatcaatttttttgtcgtcccatctaataccttct 968
Query: 820 ttaaagcctgtgctgtgtgcataactggcatccttacga-ttaccgtttcccg-taactg 877
|||| ||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||
Sbjct: 967 ttaaggcctgtgctgtgtgcataacttgcattcttacgatttaccgtttcccgttaactg 908
Query: 878 actttgcggtttta-aacaattttac 902
||| |||||||||| |||||||||||
Sbjct: 907 actctgcggttttagaacaattttac 882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6537
Number of Sequences: 1807
Number of extensions: 6537
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)