BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB10FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1497 0.0
>3x_Contig1732
Length = 24266
Score = 1497 bits (755), Expect = 0.0
Identities = 809/822 (98%), Gaps = 4/822 (0%)
Strand = Plus / Minus
Query: 88 caaggagtaagaatgcagaccaagtgcctaagaattacgagagtccattatttcctttac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18267 caaggagtaagaatgcagaccaagtgcctaagaattacgagagtccattatttcctttac 18208
Query: 148 ttgaagacgaagaattccctaaagtgaaaggtgctaatagaccgagacttcctccaacgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18207 ttgaagacgaagaattccctaaagtgaaaggtgctaatagaccgagacttcctccaacgg 18148
Query: 208 gtaaaattagttctaactacaagaagaaacatgtctcagaattatatactttgcctgaag 267
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18147 gtaaaattagtacaaactacaagaagaaacatgtctcagaattatatactttgcctgaag 18088
Query: 268 aggaagagccccaagtgaaagttgaagtctctgaagataccgcctcgaaacccaccgatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18087 aggaagagccccaagtgaaagttgaagtctctgaagataccgcctcgaaacccaccgatg 18028
Query: 328 gaatcttcaaatctccagcgacagtcgacgataatggattttacgttgaggaaactccac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18027 gaatcttcaaatctccagcgacagtcgacgataatggattttacgttgaggaaactccac 17968
Query: 388 tctcatcattcagtttaagtttaccagggattcctgatacgtaggaacacagaccagcga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17967 tctcatcattcagtttaagtttaccagggattcctgatacgtaggaacacagaccagcga 17908
Query: 448 atatcttgtagctcttagagttatatacagaaataatacaagagtattaaaaaacgtcta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17907 atatcttgtagctcttagagttatatacagaaataatacaagagtattaaaaaacgtcta 17848
Query: 508 taaaagttcctttttttagcataacgatcttaatattaatgtcaacatagtaaaagggta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17847 taaaagttcctttttttagcataacgatcttaatattaatgtcaacatagtaaaagggta 17788
Query: 568 ccagtagccagtactgatttacttccctaatatacttggaagtacaaggccaaataacag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17787 ccagtagccagtactgatttacttccctaatatacttggaagtacaaggccaaataacag 17728
Query: 628 taatactcagttttgctcctctacaacctcttctagaatttccacctctatgtctgggta 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17727 taatactcagttttgctcctctacaacctcttctagaatttccacctctatgtctgggta 17668
Query: 688 tccaatatcacggaaagcttccatcaacttatctttgagctcttgcgctgtcccgccttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17667 tccaatatcacggaaagcttccatcaacttatctttgagctcttgcgctgtcccgccttt 17608
Query: 748 ataaggagattctatctcatcagtagcaaatatattccggactagaccagtgctttttct 807
||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||
Sbjct: 17607 ataaggagattctatctcatcagtagcaaatatatccggaactagaccagtgc-ttttct 17549
Query: 808 cgggtaaagagntgccttgatgtctcatccgtttgattaactggcattgagtcaaaatat 867
||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 17548 cgggtaaagagttg-cttgatgtctcatccgtttgattaactgtcattgagtcaaaatat 17490
Query: 868 accatgttatgaaatcgtcaatttcatttaaaggggaggcat 909
||||||||||| ||||| ||| |||||||||| |||||||||
Sbjct: 17489 accatgttatg-aatcggcaa-ttcatttaaaagggaggcat 17450
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5956
Number of Sequences: 1807
Number of extensions: 5956
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)