BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB10RM1.SCF screened BAC_end
(863 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1404 0.0
>3x_Contig1789
Length = 30977
Score = 1404 bits (708), Expect = 0.0
Identities = 759/768 (98%), Gaps = 6/768 (0%)
Strand = Plus / Plus
Query: 50 tataaggagccaatctaaggacagaggtggtttacgatatgttgaatgctgccagaatga 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699 tataaggagccaatctaaggacagaggtggtttacgatatgttgaatgctgccagaatga 28758
Query: 110 actcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaagaagac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28759 actcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaagaagac 28818
Query: 170 tactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgctattg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28819 tactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgctattg 28878
Query: 230 aagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccggata 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28879 aagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccggata 28938
Query: 290 aagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttctctg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28939 aagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttctctg 28998
Query: 350 ataaatcaccatcatggacagggataatggagacggataaagattctgatagccagacac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28999 ataaatcaccatcatggacagggataatggagacggataaagattctgatagccagacac 29058
Query: 410 cgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaatatcgg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29059 cgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaatatcgg 29118
Query: 470 cgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtggcag 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29119 cgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtggcag 29178
Query: 530 aaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcatttaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29179 aaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcatttaa 29238
Query: 590 agaagactgtgaccacagataaagagttgttggacacttgcatgcattacttggaccaat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29239 agaagactgtgaccacagataaagagttgttggacacttgcatgcattacttggaccaat 29298
Query: 650 acttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatccaca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29299 acttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatccaca 29358
Query: 710 agagatcttgcgagg-gccctccaatttaccacaacccttattcaataacgttacctgcc 768
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 29359 agagatcttgcgaggaaccatccaatttaccacaa-ccttattcaataacgttacctgcc 29417
Query: 769 attatacggtacattatttga-agtgggagagttccaaactacctgga 815
|| |||||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 29418 atcatacggtaca-tatttgatagt-ggagagtt-caaactacctgga 29462
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6525
Number of Sequences: 1807
Number of extensions: 6525
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 863
length of database: 10,358,551
effective HSP length: 16
effective length of query: 847
effective length of database: 10,329,639
effective search space: 8749204233
effective search space used: 8749204233
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)