BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB11FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1453 0.0
>3x_Contig1515
Length = 8855
Score = 1453 bits (733), Expect = 0.0
Identities = 813/834 (97%), Gaps = 5/834 (0%)
Strand = Plus / Plus
Query: 89 tgctgttgcaatgctttaaaaacaacatcggaatgtgtgttgtagataaagattatcgga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 tgctgttgcaatgctttaaaaacaacatcggaatgtgtgttgtagataaagattatcgga 3089
Query: 149 ctgattacaagaaatataacgttcatgaattgttcgaaatgaagcataaaaataaagaaa 208
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3090 ctgattacaagaaatataacgttcaggaattgttcgaaatgaagcataaaaataaagaaa 3149
Query: 209 ctactctnactan-gtttagtctgccccggcttctacccaaagcaatactagcaaataga 267
|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 ctactcctactactgcagagtctgccccggcttctacccaaagcaatactagcaaataga 3209
Query: 268 cccttttgtataatgtattaatttcgctacattcaattaaatacttaacgtacggtataa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3210 cccttttgtataatgtattaatttcgctacattcaattaaatacttaacgtacggtataa 3269
Query: 328 atactccgttggttgttgccaagcaagccaatcacttgacgtagttgggaacaatcccat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3270 atactccgttggttgttgccaagcaagccaatcacttgacgtagttgggaacaatcccat 3329
Query: 388 tgaattcaacttatgcaaacctattcccatgaggattaattggtatatcacgtacataat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 tgaattcaacttatgcaaacctattcccatgaggattaattggtatatcacgtacataat 3389
Query: 448 catggctgcaactacaggcggggttacatcattatctttgttgattaaatgttgaaattt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 catggctgcaactacaggcggggttacatcattatctttgttgattaaatgttgaaattt 3449
Query: 508 tgacttaactcctaagatacttttgatgggatttgagaccaacatcacagcagtcattat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 tgacttaactcctaagatacttttgatgggatttgagaccaacatcacagcagtcattat 3509
Query: 568 aggaataatttgcaagctgttaccagacatatatgacataattatattcatgggaacaga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 aggaataatttgcaagctgttaccagacatatatgacataattatattcatgggaacaga 3569
Query: 628 tttgagaggctcagaagatatctgccatgcccgttctgcagtgagtttggctatacgatt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 tttgagaggctcagaagatatctgccatgcccgttctgcagtgagtttggctatacgatt 3629
Query: 688 ttgagcgtcatgatctatcaccttagggggcttctgtccttcgatctctagtttctttat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3630 ttgagcgtcatgatctatcaccttagggggcttctgtccttcgatctctagtttctttat 3689
Query: 748 tccaaacggatccggcaatttaccaccattgacactatttcgcctcatcactttgtccaa 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3690 tccaaacggatccggcaatttaccaccattgacactatttcgcctcatcactttgt-caa 3748
Query: 808 ctttcaaatctttcgcccattgtgggatatcttctgacat-atttccttttgaagcttgt 866
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 3749 ctttcaaatctttcgcccattgtgggatatcttctgacataattccctcttgaagcttgt 3808
Query: 867 cta-taggccaatttcctttttgagg-aatcataaatccttacccttggngaat 918
||| ||| |||||||| | |||||| ||||||||||| ||||| |||| ||||
Sbjct: 3809 ctattagtccaatttcactcttgaggaaatcataaatctttaccattggtgaat 3862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6520
Number of Sequences: 1807
Number of extensions: 6520
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)