BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB11RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig515 1626 0.0
>3x_Contig515
Length = 1717
Score = 1626 bits (820), Expect = 0.0
Identities = 875/888 (98%), Gaps = 4/888 (0%)
Strand = Plus / Minus
Query: 50 cggtgtttaccctttgagagaactctcgttgactctttccaattttgatataatagacaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 cggtgtttaccctttgagagaactctcgttgactctttccaattttgatataatagacaa 1367
Query: 110 ggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactga 1307
Query: 170 taacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggccctta 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 taacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggccctta 1247
Query: 230 tgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctcctac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctcctac 1187
Query: 290 aatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaaactgtt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 aatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaaactgtt 1127
Query: 350 ccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacggagtatc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacggagtatc 1067
Query: 410 agagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaaagctaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 agagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaaagctaa 1007
Query: 470 gaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaagttctt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaagttctt 947
Query: 530 caagaagtgataaatctccacccacatatacttgtatatttatagttaatcgtatcatcg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 caagaagtgataaatctccacccacatatacttgtatatttatagttaatcgtatcatcg 887
Query: 590 tcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgcatatcc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgcatatcc 827
Query: 650 gggtaatatcttgcttttcgtctttctttcttttctgaattccacattcgatttcgaact 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gggtaatatcttgcttttcgtctttctttcttttctgaattccacattcgatttcgaact 767
Query: 710 taaaatagacaattaagagatccaatgtttgttaaataagtgtgtaagttgtaattttag 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 taaaatagacaattaagagatccaatgtttgttaaataagtgtgtaagttgtaattttag 707
Query: 770 ccagatctttttatcctcaaaa-gtcaacagggagaaggaaagcagcgatacccagcgtt 828
||||||||||||| |||||||| ||||||||| ||| |||| ||||||||||||||||
Sbjct: 706 ccagatctttttaacctcaaaaggtcaacaggaagagggaagcaagcgatacccagcgtt 647
Query: 829 taaagcagctaacgcacacattattttctgaacagcttccaggctgttatacagctacct 888
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct: 646 aaaagcagctaacgcacaca-tattctctgaacagcttccaggctgttatacagcta-ct 589
Query: 889 ttggactacaactcattttcttttacaagaaaccacctaattaaatct 936
||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 588 ttggactacaactcattttcttttacaag-aaccacctcattaaatct 542
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7982
Number of Sequences: 1807
Number of extensions: 7982
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)