BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB12RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1281 0.0
>3x_Contig1648
Length = 16375
Score = 1281 bits (646), Expect = 0.0
Identities = 736/758 (97%), Gaps = 7/758 (0%)
Strand = Plus / Minus
Query: 48 tgattctatcctcaagggcaatcttcacgatgttcgatactttattgcagatgaaatttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8467 tgattctatcctcaagggcaatcttcacgatgttcgatactttattgcagatgaaatttt 8408
Query: 108 cgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaattgatgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407 cgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaattgatgg 8348
Query: 168 atgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaagttag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8347 atgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaagttag 8288
Query: 228 ttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaactttctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8287 ttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaactttctt 8228
Query: 288 gcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgttaactt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 gcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgttaactt 8168
Query: 348 tggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttgaggaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 tggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttgaggaag 8108
Query: 408 tgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtacaaagat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 tgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtacaaagat 8048
Query: 468 ccattgtggccaaatatttgattacacctttgaataattggtaagatgagatcccatgnc 527
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8047 ccattgtggccaaatatttgattacacctttgaataattggtaagatgagaacccatgca 7988
Query: 528 ataaaattctgttaccattcaacccaccaccatttagtanggctgccatcaacgtggcat 587
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7987 ataaaattctgttaccattcaacccaccaccatttagtagggctgccatcaacgtggcaa 7928
Query: 588 actcgaaatttccaaaaacacccaacgcatctgaatgagacatatttgatgagaagcctc 647
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7927 actcgaaatttccaaaaccacccaacgcatctgaatgagacatatttgatgagaagcctc 7868
Query: 648 tctgagat-accatagctttccc-atatacaagcctgttt-aactgntctgtttggttct 704
|||||||| |||||||||| ||| | |||||||||||||| ||||| |||||||| ||||
Sbjct: 7867 tctgagataaccatagcttccccaaaatacaagcctgtttaaactgttctgtttgtttct 7808
Query: 705 ttgatttgngtaagtacttcaaata-tgttcgtgacaagaagatgataatcccgagaaa- 762
|||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 7807 ttgatttgtgtaagtacttcaaatagtgttcgtgacaagaagatgataataccgagaaat 7748
Query: 763 tgtagaaa-gtggcggaatttcg-tattctgaccgact 798
|||||||| ||| |||| ||||| ||| ||||||||||
Sbjct: 7747 tgtagaaaggtgtcggagtttcgttatcctgaccgact 7710
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6596
Number of Sequences: 1807
Number of extensions: 6596
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)