BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC01FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig792 1057 0.0
>3x_Contig792
Length = 2203
Score = 1057 bits (533), Expect = 0.0
Identities = 563/569 (98%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 214 gtattttgttttgatcttcaatgcagtttccgttattgcacagacgatctcaaaagttaa 273
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtatcttgttttgatcttcaatgcagtttccgttattgcacagacgatctcaaaagttaa 61
Query: 274 gaacccaagaatatcgattacatcatcgtgaggtttactgtctatcaactgagatattcc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaacccaagaatatcgattacatcatcgtgaggtttactgtctatcaactgagatattcc 121
Query: 334 agaccaatctttgaatctttttgattttctgaaagtgaaactggcttgtcgacaatcaga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agaccaatctttgaatctttttgattttctgaaagtgaaactggcttgtcgacaatcaga 181
Query: 394 ccaatgcacgtattcttccttcgtcatacctctagtcctatcatcagccatttttagtct 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccaatgcacgtattcttccttcgtcatacctctagtcctatcatcagccatttttagtct 241
Query: 454 cttcaatgtagccatattagcctcccgttcatcatcgtccatatcatcctcatctggatt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttcaatgtagccatattagcctcccgttcatcatcgtccatatcatcctcatctggatt 301
Query: 514 ctcaagaggttgctcattgaacatgaactgtaactcccatggtagcttgatgcttgactt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctcaagaggttgctcattgaacatgaactgtaactcccatggtagcttgatgcttgactt 361
Query: 574 cttcactttcatgttgactccggctccgtctttgtcctttttgccagcatcatcatcatc 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cttcactttcatgttgactccggctccgtctttgtcctttttgccagcatcatcatcatc 421
Query: 634 aataccgtcaggaccagagccatctcctgcaccaccacctgctgcagcttgctgtgcatc 693
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aataccgccaggaccagagccatctcctgcaccaccacctgctgcagcttgctgtgcatc 481
Query: 694 ttgatctttggcattttttct-aggtccttccatgatagatatgtacgcaatctgttcac 752
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttgatctttggcattttttctaaggtccttccatgatagatatgtacgcaatctgttcac 541
Query: 753 ctttagctctatcatgttctgattaaaaa 781
| |||||| ||||||| ||||||||||||
Sbjct: 542 c-ttagctttatcatg-tctgattaaaaa 568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7751
Number of Sequences: 1807
Number of extensions: 7751
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)