BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC01RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1380 0.0
>3x_Contig1762
Length = 22098
Score = 1380 bits (696), Expect = 0.0
Identities = 755/767 (98%), Gaps = 6/767 (0%)
Strand = Plus / Plus
Query: 42 aagctttatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaac 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11520 aagctttatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaac 11579
Query: 102 gttgattttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11580 gttgattttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaa 11639
Query: 162 catgaaaccacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11640 catgaaaccacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagc 11699
Query: 222 attttcatatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11700 attttcatatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatt 11759
Query: 282 tgtaattagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactgg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11760 tgtaattagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactgg 11819
Query: 342 ggtcatactaaagaatccatgcttccagtgacctaacaatgcaacacgttcattgagaac 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11820 ggtcatactaaagaatccatgcttccagtgacctaacaatgcaacacgttcattgagaac 11879
Query: 402 aaacaagtttgggaaatttctctggaaataaggtgccaccgagaagagctcacctgggaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11880 aaacaagtttgggaaatttctctggaaataaggtgccaccgagaagagctcacctgggaa 11939
Query: 462 atgacgacgaagtttgcaaacccaatttactggagaatggtagtgatgataatcaccagg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11940 atgacgacgaagtttgcaaacccaatttactggagaatggtagtgatgataatcaccagg 11999
Query: 522 agccaaataaatgaccgcaaaatatagctgggtatcggtagaagataattnttgtttgac 581
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12000 agccaaataaatgaccgcaaaatatagctgggtatcggtagaagataatttttgtttgac 12059
Query: 582 atagttgggggatagctcacccaatagggtaaaagtcttggaagaatcttgatctgagat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12060 atagttgggggatagctcacccaatagggtaaaagtcttggaagaatcttgatctgagat 12119
Query: 642 ggcttggttctttttcattttataatcgaaaggttgtaaaatggtcttcactttgagaac 701
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12120 ggcttggttcttttccattttataatcgaaaggttgt-aaatggtcttcactttgagaa- 12177
Query: 702 ccctgggtatgacccaatgatatcgttcaaactgtatgggatatcattggattcttgcaa 761
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 12178 cctggggtatga-ccaatgatatcgttcaaactgtatgggatatcatt-gattcttgcaa 12235
Query: 762 attctctgtgatcattattaagtcttagtatccctgccccaatttct 808
||||||||||||||||| | ||||||||||| ||||||||| |||||
Sbjct: 12236 attctctgtgatcatta-tcagtcttagtat-cctgccccagtttct 12280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6851
Number of Sequences: 1807
Number of extensions: 6851
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)