BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC03FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1429 1542 0.0
>3x_Contig1429
Length = 8041
Score = 1542 bits (778), Expect = 0.0
Identities = 860/878 (97%), Gaps = 7/878 (0%)
Strand = Plus / Plus
Query: 86 taccgagagagaagaagaagcgaccaaaggagaaaaggaagagcaaattttggttttggg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4354 taccgagagagaagaagaagcgaccaaaggagaaaaggaagagcaaattttggttttggg 4413
Query: 146 gatcccttacccatcatactgacgaaggaaaccacagagacaaagctaggtcgccagagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4414 gatcccttacccatcatactgacgaaggaaaccacagagacaaagctaggtcgccagagc 4473
Query: 206 ttgaagattatttatttggtgttgtatcaccgaattcgcggtcccccacgttatcgattc 265
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4474 ttgaagattataaaattggtgttgtatcaccgaattcgcggtcccccacgttatcgattc 4533
Query: 266 ctttctctgatcccgataacactcagactattaccaataacgcagtatcggacaacatta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4534 ctttctctgatcccgataacactcagactattaccaataacgcagtatcggacaacatta 4593
Query: 326 accatcacctgtcgctaatagacctcgacgatgacgaggaacacttaaagtgttcaacgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4594 accatcacctgtcgctaatagacctcgacgatgacgaggaacacttaaagtgttcaacgc 4653
Query: 386 caccgttaatactgtgatacgtactttttttaggcctaatatatttatttctcatcctat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4654 caccgttaatactgtgatacgtactttttttaggcctaatatatttatttctcatcctat 4713
Query: 446 ttaaatatcatctacattagcactgtaactatatacctttttttgagccggcgttattat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4714 ttaaatatcatctacattagcactgtaactatatacctttttttgagccggcgttattat 4773
Query: 506 aacttgttctctgcgtaccggggtagccacgattgcctctggtatgtggttggtgctcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 aacttgttctctgcgtaccggggtagccacgattgcctctggtatgtggttggtgctcat 4833
Query: 566 atgacccacttgattgcaattttctgcttgctcctctcgtagtgccttgtcttccttaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834 atgacccacttgattgcaattttctgcttgctcctctcgtagtgccttgtcttccttaag 4893
Query: 626 aacatctgtatacgttggaggatcctctggcaa-gaacttttcttctcatcaggatattg 684
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4894 aacatctgtatacgttggaggatcctctggcaaggaacttttcttctcatcaggatattg 4953
Query: 685 cttctgatcgtcttgagacatctttccgtaagtttgagtttaactgtttacgactccgaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 cttctgatcgtcttgagacatctttccgtaagtttgagtttaactgtttacgactccgaa 5013
Query: 745 t-ttggtccaagggaaatctcaactcttcgaacagcgtcgggtctgattgccattaaaat 803
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5014 tgttggtccaagggaaatctcaactcttcgaacagcgtcggttctgattgccattaaaat 5073
Query: 804 atattgtcggttctatacattataaatggttc-aacagggtccttgatgtgcagatttcc 862
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5074 atattgtcgtttctatacattataaatggttcaaacagggtccttgatgtgcagatttcc 5133
Query: 863 cttt-aaaccttacaaat-gcgtaatgctatattatcatatttcagatgttaagatgaaa 920
|||| ||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 5134 ctttaaaaccttacaaatggcgtaatgctatatcatcatatatcagatgtaaagatgaaa 5193
Query: 921 ag-agggaaatttgatttctaaggt-ttccaggctttg 956
|| ||| |||| |||| |||||||| ||||||||||||
Sbjct: 5194 agaaggaaaatatgatatctaaggtattccaggctttg 5231
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6791
Number of Sequences: 1807
Number of extensions: 6791
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)