BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZC03RM1.SCF screened BAC_end
         (900 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1791                                                         920   0.0  

>3x_Contig1791 
          Length = 39945

 Score =  920 bits (464), Expect = 0.0
 Identities = 509/524 (97%)
 Strand = Plus / Minus

                                                                         
Query: 47    cgttctctagtaattcagatttttcggctactttagtactaatgaccccaacttggtctt 106
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28181 cgttctctagtaattcagatttttcggctactttagtactaatgaccccaacttggtctt 28122

                                                                         
Query: 107   ctgtaccctctggttcatctggatgatgaagttcttcgtcactattcaacgattctttca 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28121 ctgtaccctctggttcatctggatgatgaagttcttcgtcactattcaacgattctttca 28062

                                                                         
Query: 167   cagtgactacttgctctttataccatcttccgatctttttcatacctgtttgcaagtacc 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28061 cagtgactacttgctctttataccatcttccgatctttttcatacctgtttgcaagtacc 28002

                                                                         
Query: 227   ttttggttgcgtttgagtttgttgaatcaactgaagacctagatcttatagatacatttg 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28001 ttttggttgcgtttgagtttgttgaatcaactgaagacctagatcttatagatacatttg 27942

                                                                         
Query: 287   aatcatcgttacttttatttttcaggaatgatcgagtactatccgtagacgtttgtggct 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27941 aatcatcgttacttttatttttcaggaatgatcgagtactatccgtagacgtttgtggct 27882

                                                                         
Query: 347   gatctgtgttgtacgattcgttaatggtgctttcactttcttcgacggttggtgagtcaa 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27881 gatctgtgttgtacgattcgttaatggtgctttcactttcttcgacggttggtgagtcaa 27822

                                                                         
Query: 407   cagcagagttagtcgactgccgttcggctaagttggtgttcgatatgtcattgttctcgc 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27821 cagcagagttagtcgactgccgttcggctaagttggtgttcgatatgtcattgttctcgc 27762

                                                                         
Query: 467   gaacagaagaccctggggtaaattggcggtcacttttgaaaaattcaaagtcctcgggat 526
             ||||||||||||||| | ||||||| || |||||||||| | |||||||||| |||| ||
Sbjct: 27761 gaacagaagaccctgtgttaaattgtcgctcacttttgatatattcaaagtcttcggtat 27702

                                                         
Query: 527   aactcggatcccttttttgtttgggggattcccaaatacctcct 570
             |||| | |||| |||||||||| |  |||||||| |||||||||
Sbjct: 27701 aacttgtatcctttttttgtttcgttgattcccagatacctcct 27658


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6501
Number of Sequences: 1807
Number of extensions: 6501
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)