BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC04FM1.SCF screened BAC_end
(1088 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1031 176 6e-44
>3x_Contig1031
Length = 5135
Score = 176 bits (89), Expect = 6e-44
Identities = 101/104 (97%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 91 cttcctctgtgataatacgctctctggctttacttacgcttggaaaattttactgataaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 cttcctctgtgataatacgctctctggctttacttacgcttggaaaattttactgataaa 1262
Query: 151 agaaatctgttaaaggtagggtaatgtatggaaaatagcatccc 194
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1261 agaaatctgttaaaggtagggtaatg--aggaaaatagcatccc 1220
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,690
Number of Sequences: 1807
Number of extensions: 70690
Number of successful extensions: 7602
Number of sequences better than 1.0e-20: 1
length of query: 1088
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1072
effective length of database: 10,329,639
effective search space: 11073373008
effective search space used: 11073373008
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)