BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC04RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 1298 0.0
>3x_Contig858
Length = 3029
Score = 1298 bits (655), Expect = 0.0
Identities = 767/793 (96%), Gaps = 9/793 (1%)
Strand = Plus / Minus
Query: 47 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 1205
Query: 107 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 1145
Query: 167 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 1085
Query: 227 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 1025
Query: 287 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 965
Query: 347 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 905
Query: 407 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 845
Query: 467 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattntctgaacttt 526
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 844 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 785
Query: 527 gaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 725
Query: 587 aaataacaacatatacattcttattctctctcgtaagacaatacagcactacagatatgg 646
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 724 aaataacaacatatacattcttattctctctcgtaggacaatacagcactacagatatgg 665
Query: 647 cagccacgtcg-aaaagttgaaccagcgtcaattgggatctaaagagttcgaa-gattct 704
||||||||||| ||||||||||| |||||||||||| |||||| ||| ||||| ||||||
Sbjct: 664 cagccacgtcgaaaaagttgaacaagcgtcaattggaatctaaggag-tcgaaggattct 606
Query: 705 gttaaaattggtaaaaagagctaaaaacattagttgttgattctggcaatggaaaattct 764
| ||||||| ||||||||||||||||||||||| ||||||||||||| || ||| |||||
Sbjct: 605 ggtaaaatt-gtaaaaagagctaaaaacattag-tgttgattctggcgat-gaagattct 549
Query: 765 gatgatgtccttcaccgtttaatcttcaaaagatgagcctnaatgatgaaattaaatgat 824
||||||||||| ||| |||| ||||||| |||||||| || |||||| ||||| |||||
Sbjct: 548 gatgatgtcctccacggttt-atcttcagaagatgag-ctagatgatg-aattagatgat 492
Query: 825 gctagctccaatt 837
|||||||| ||||
Sbjct: 491 gctagctcaaatt 479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9607
Number of Sequences: 1807
Number of extensions: 9607
Number of successful extensions: 332
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)