BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1633 0.0
>3x_Contig1485
Length = 9830
Score = 1633 bits (824), Expect = 0.0
Identities = 846/852 (99%), Gaps = 1/852 (0%)
Strand = Plus / Plus
Query: 85 ctacttgatatataccctatcaatgtgccacaaattaccataaatgaggatgaagtgaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8208 ctacttgatatataccctatcaatgtgccacaaattaccataaatgaggatgaagtgaat 8267
Query: 145 gagacatggaatcaagaactagaagcgttaaaaagcatttatgagtctaacttcgaacaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8268 gagacatggaatcaagaactagaagcgttaaaaagcatttatgagtctaacttcgaacaa 8327
Query: 205 ctcaacgcttgtttttacaagatcaatctcaacgatgagttcaaaatcaaactgaaggtc 264
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8328 ctcaacgctagttcttacaagatcaatctcaacgatgagttcaaaatcaaactgaaggtc 8387
Query: 265 tacaagacaaagtcctacccacaaactcttcctggtattgtcgtgtccacattcgacaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8388 tacaagacaaagtcctacccacaaactcttcctggtattgtcgtgtccacattcgacaaa 8447
Query: 325 tcatacaagcttccaaattacataaagctaacaattctagaaaagcttttacattttctt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8448 tcatacaagcttccaaattacataaagctaacaattctagaaaagcttttacattttctt 8507
Query: 385 gaagagtctcaactaattggtgacatgtgcgtttaccatattgtcgattggctccagcaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8508 gaagagtctcaactaattggtgacatgtgcgtttaccatattgtcgattggctccagcaa 8567
Query: 445 aatttatctgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaaatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8568 aatttatctgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaaatc 8627
Query: 505 acttctaataatttgatcaaaagcactaataaaaaaagaagattcaatgccagaacctct 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8628 acttctaataatttgatcaaaagcactaataaaaaaagaagattcaatgccagagcctct 8687
Query: 565 aaattgtcgaatcaagagg-tttcagagttggaagatgaatatagaaagaggcagaaaag 623
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8688 aaattgtcgaatcaagaggttttcagagttggaagatgaatatagaaagaggcagaaaag 8747
Query: 624 taatgaattccatactatgagggaacagcgctcaaagctaccggcttggaaaatacagaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8748 taatgaattccatactatgagggaacagcgctcaaagctaccggcttggaaaatacagaa 8807
Query: 684 ttctatcgtagagcttataaattctaatgatgttgttcttattacaggtgaaactggttc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8808 ttctatcgtagagcttataaattctaatgatgttgttcttattacaggtgaaactggttc 8867
Query: 744 gggtaaatcaacacaggtcgttcaatttgtccttgataatttaatgcaacatggcgattt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8868 gggtaaatcaacacaggtcgttcaatttgtccttgataatttaatgcaacatggcgattt 8927
Query: 804 gaacaagacgttcataatctgcacacagccaagaaggatatctgcaattggtctagcgga 863
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8928 gaacaagacgtccataatctgcacacagccaagaaggatatctgcaattggtctagcgga 8987
Query: 864 gcgtgtatcacaggaacggtgtgtcaaatgtggtgatgaagtagggtatattattagagg 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8988 gcgtgtatcacaggaacggtgtgtcaaatgtggtgatgaagtagggtatattattagagg 9047
Query: 924 tgtttatctgac 935
|||| |||||||
Sbjct: 9048 tgttaatctgac 9059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7120
Number of Sequences: 1807
Number of extensions: 7120
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)