BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC05RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1023 0.0
>3x_Contig1303
Length = 8112
Score = 1023 bits (516), Expect = 0.0
Identities = 578/592 (97%), Gaps = 5/592 (0%)
Strand = Plus / Minus
Query: 53 gccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttccta 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 gccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttccta 1703
Query: 113 tagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacacaggt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 tagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacacaggt 1643
Query: 173 tttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaagaaat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 tttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaagaaat 1583
Query: 233 tcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataattatta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 tcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataattatta 1523
Query: 293 ttttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgcata 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 ttttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgcata 1463
Query: 353 agttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcagata 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 agttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcagata 1403
Query: 413 atgggccagatttgtggcttgagaagatcaagatatgtcaggctttgacggagtctgaga 472
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1402 atgggccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctgaga 1343
Query: 473 tgaaacagctatgcgagatgatgaaagaactcttatgggaagaatcg-atattcagccgg 531
||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||
Sbjct: 1342 tgaaacagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagccgg 1283
Query: 532 ttcaatcgcc-gtgactgtttggtgtgatatttacggacaatttcatgacc-tttagaac 589
|||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 1282 ttcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttagaac 1223
Query: 590 tattca-aactgctggggggtttcctgatcaaataaact-tatttttcttgg 639
|||||| ||||||||| ||||||||||||||| |||||| ||||||||||||
Sbjct: 1222 tattcagaactgctggtgggtttcctgatcaagtaaactatatttttcttgg 1171
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,993
Number of Sequences: 1807
Number of extensions: 18993
Number of successful extensions: 393
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)