BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC06FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 599 e-171
3x_Contig771 313 4e-85
>3x_Contig1617
Length = 15119
Score = 599 bits (302), Expect = e-171
Identities = 311/314 (99%)
Strand = Plus / Plus
Query: 86 cagcctcgtccttcttatcttccttcttcttcttttcgatgacttcacgtggaagatcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14766 cagcctcgtccttcttatcttccttcttcttcttttcgatgacttcacgtggaagatcca 14825
Query: 146 aatcaatgttcaaagtcaagtcgttcaattgtaataaatcgttcaagtattgtgaccatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14826 aatcaatgttcaaagtcaagtcgttcaattgtaataaatcgttcaagtattgtgaccatc 14885
Query: 206 taagaatatgtctgtacttagcatagttacccttgacatctttagaagagttgatcaact 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14886 taagaatatgtctgtacttagcatagttacccttgacatctttagaagagttgatcaact 14945
Query: 266 ccttggcaactggtaaaacatgttcgaacaatgtaacatcggagacggttggttgagcag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14946 ccttggcaactggtaaaacatgttcgaacaatgtaacatcggagacggttggttgagcag 15005
Query: 326 tacccaaaacgaaagtgtgatccctcaaatgtagattcaattcctcaaaactaccctgaa 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15006 tacccaaaacgaaagtgtgatccctcaaatgtagattcaattcctcaaaactaccctgta 15065
Query: 386 tgttcccagacttg 399
||| ||||| ||||
Sbjct: 15066 tgtgcccagtcttg 15079
>3x_Contig771
Length = 2311
Score = 313 bits (158), Expect = 4e-85
Identities = 241/263 (91%), Gaps = 5/263 (1%)
Strand = Plus / Plus
Query: 702 tctcatagtcagaaagttggaaatttctgtcacgtgagaaatat-aaagttctgatcagt 760
||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct: 308 tctcatagtcagatagttgttaatttctgtcacgtgagtaatattaaagttctgatcagt 367
Query: 761 gcattgagtattggttactgtggagattgacgtaaaggtgaattanaaaataatacccca 820
||||||||||||||||||||||||||||||||||||||||||| | | |||| ||
Sbjct: 368 gcattgagtattggttactgtggagattgacgtaaaggtgaatgggagataaataaccag 427
Query: 821 gta-cgaagacgtcgtattatctatgtagcagccaattatatggcattaagtgcttgaat 879
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 gtaacgaagacgtcgtattatctatgtagcagccaataatatggcattaagtgcttgaat 487
Query: 880 atacatgactatacctttncaattagaagactc-acaaatg-tgtaattctctca-gatc 936
|||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||| ||||
Sbjct: 488 atacatgactataccttttcaataagaagactcaacaaatgttgtaattctctcaggatc 547
Query: 937 tgncgcttcctcctgcttaattt 959
|| ||||||||||||||||||||
Sbjct: 548 tgtcgcttcctcctgcttaattt 570
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7596
Number of Sequences: 1807
Number of extensions: 7596
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)