BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC06RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig904 1063 0.0
>3x_Contig904
Length = 3319
Score = 1063 bits (536), Expect = 0.0
Identities = 614/628 (97%), Gaps = 9/628 (1%)
Strand = Plus / Minus
Query: 52 aagcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaatt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 aagcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaatt 858
Query: 112 atgctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaag 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atgctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaag 798
Query: 172 ggttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacag 738
Query: 232 tttgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggagg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggagg 678
Query: 292 caccgaattcgtggcttagggtgctactgaaccgtgagatagttggtgatttcaagacct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caccgaattcgtggcttagggtgctactgaaccgtgagatagttggtgatttcaagacct 618
Query: 352 cacgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cacgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttg 558
Query: 412 cccaagagttgtgctggctcgaagatttggaaaacctcagcggcaaacaatttaagccgg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cccaagagttgtgctggctcgaagatttggaaaacctcagcggcaaacaatttaagccgg 498
Query: 472 aatcgaaaacgaaaacaaaggttcatataaataaacctgaacctgaacaacaggagaaga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aatcgaaaacgaaaacaaaggttcatataaataaacctgaacctgaacaacaggagaaga 438
Query: 532 tcaacacgaaagatgaagatgtattgaaagaagtcacggatgatatagcacttgagctaa 591
||||||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct: 437 tcaacacgaaagaggaagaggtattgaaagaggtcacggaggaaatagcacttgagctaa 378
Query: 592 at-atct-accattaaag-atgaac-acacagcgac-acatctggt-atg-tacatcttt 644
|| |||| |||||||||| |||||| |||||||||| ||||||||| ||| |||||||||
Sbjct: 377 ataatctaaccattaaagaatgaacaacacagcgacaacatctggtaatgttacatcttt 318
Query: 645 cg-aaagtgggcttttg-atcgtcttcg 670
|| |||||||||||||| ||||||||||
Sbjct: 317 cgcaaagtgggcttttgaatcgtcttcg 290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6290
Number of Sequences: 1807
Number of extensions: 6290
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)