BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC07FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig925 1509 0.0
>3x_Contig925
Length = 3823
Score = 1509 bits (761), Expect = 0.0
Identities = 794/801 (99%), Gaps = 3/801 (0%)
Strand = Plus / Plus
Query: 98 ttaaaagatttttttttcatgttgagcatagtagtctgtaagtatgtatgattaagtaag 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 ttaaaagatttttttttcatgttgagcatagtagtctgtaagtatgtatgattaagtaag 2017
Query: 158 atatgggaaggtaaaccatttttaactaattgaatggcactggctcctggtcgtgccttg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 atatgggaaggtaaaccatttttaactaattgaatggcactggctcctggtcgtgccttg 2077
Query: 218 tttctatttacatgtttatcgtggttaagagcgagagtattagtttgcgaatttttgtag 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 tttctatttacatgtttatcgtggttaagagcgagagtattagtttgcgaatttttgtag 2137
Query: 278 gattagcgatactagtttcgggtatataatgtcactagtgttaccggaaatggttgacag 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 gattagcgatactagtttcgggtatataatgtcactagtgttaccggaaatggttgacag 2197
Query: 338 aataccttgcttcaagtaatgttccttcaatggggtcactgtcttgttgtactgttctag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 aataccttgcttcaagtaatgttccttcaatggggtcactgtcttgttgtactgttctag 2257
Query: 398 cctcttgccaaacacctctgcagtatcgtcgggtctcttggtcaaaggttcaccggtgat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 cctcttgccaaacacctctgcagtatcgtcgggtctcttggtcaaaggttcaccggtgat 2317
Query: 458 atcgtcctttccgtcgactttgggagggttatattgcaaattataaactcttccacttgg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 atcgtcctttccgtcgactttgggagggttatattgcaaattataaactcttccacttgg 2377
Query: 518 aacgtgaacgtaacggttttcgattctctccaagatcacttcatgaggcacgtctagctc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 aacgtgaacgtaacggttttcgattctctccaagatcacttcatgaggcacgtctagctc 2437
Query: 578 cacgacaaggtttaatgaggcatcgtgttccaacaatgacttgtctaacacttcagcttg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 cacgacaaggtttaatgaggcatcgtgttccaacaatgacttgtctaacacttcagcttg 2497
Query: 638 acccacggtacgtgggaacccatctagtaaccaagtagcatttggatttaaccagccacg 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 acccacggtacgtgggaacccatctagtaaccaagtagcatttggatttaaccagccacg 2557
Query: 698 tgacttcaattcgtcacacacaactccggtgatcaaatctatc-ggtaacaactggcctt 756
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 2558 tgacttcaattcgtcacacacaactccggtgatcaaatc-atcgggtaacaactggcctt 2616
Query: 757 tctcaatatacgaggaggcacttaaacctaacggtgtgccatgttcaatctgtttacgta 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 tctcaatatacgaggaggcacttaaacctaacggtgtgccatgttcaatctgtttacgta 2676
Query: 817 gcaaatctccaga-gagatagccttgatgaatccgaattctttcaacgttttcaaggtct 875
||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 2677 gcaaatctccagatgagatagccttgatggatccgaattctttcaacagtttcgaggtct 2736
Query: 876 gagtacctttaccagaaccgg 896
|||||||||||||||||||||
Sbjct: 2737 gagtacctttaccagaaccgg 2757
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5492
Number of Sequences: 1807
Number of extensions: 5492
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)