BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC07RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1255 0.0
>3x_Contig1748
Length = 22566
Score = 1255 bits (633), Expect = 0.0
Identities = 742/771 (96%), Gaps = 6/771 (0%)
Strand = Plus / Plus
Query: 48 tgcccgatagagctccatatgaagttacgttcgatggtccaaatgatcctctacatcctt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16239 tgcccgatagagctccatatgaagttacgttcgatggtccaaatgatcctctacatcctt 16298
Query: 108 tcaactggcctttgaagaagaaacttgtgatctgtataatgttgggtcttgactgtattg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16299 tcaactggcctttgaagaagaaacttgtgatctgtataatgttgggtcttgactgtattg 16358
Query: 168 ccatcaccatgggttcctctatctttgcatctgcagttaccactatttctgaaatatatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16359 ccatcaccatgggttcctctatctttgcatctgcagttaccactatttctgaaatatatg 16418
Query: 228 aagttgccaacgtcgtttctattcttggtattactttatatgtccttggtttcgcagctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16419 aagttgccaacgtcgtttctattcttggtattactttatatgtccttggtttcgcagctt 16478
Query: 288 ccccagttatttacgctccattatcggaattatatggtagacaaggtgtgctattgattg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16479 ccccagttatttacgctccattatcggaattatatggtagacaaggtgtgctattgattg 16538
Query: 348 cttcgtttggtttcgctttgttccagtttgctgtagctactgcagaaaatttacaaacta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16539 cttcgtttggtttcgctttgttccagtttgctgtagctactgcagaaaatttacaaacta 16598
Query: 408 ttttgatttgtagatttttcggtggttttatcggtgctgcaccattagctgtggtgccgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16599 ttttgatttgtagatttttcggtggttttatcggtgctgcaccattagctgtggtgccgg 16658
Query: 468 cttctttctccgatatgtttgacaatacacaaagaggtactgccgttactatgtttgcct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659 cttctttctccgatatgtttgacaatacacaaagaggtactgccgttactatgtttgcct 16718
Query: 528 tgngtgtcttcgtcggtccaatcttggctccagtgttcngttcttacattgtgcaataca 587
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16719 tgggtgtcttcgtcggtccaatcttggctccagtgttcggttcttacattgtgcaataca 16778
Query: 588 ccctcttggagatggactgaatacgttactggtatttttgcttctgtcatttttgtcctg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16779 -cctcttggagatggactgaatacgttactggtatttttgcttctgtcatttttgtcctg 16837
Query: 648 ttatgctatttcttgtaag-aactcattacccaactattttgggttattaagcccagatt 706
|||||||||||||| ||| ||||||| ||||||||||||||| | || ||||| ||||
Sbjct: 16838 ttatgctatttctttgaagaaactcatcacccaactattttggttaataaagccaagatg 16897
Query: 707 atgagaaagaagactggtaatttggggtatccacccacttcataaaaaaatcgaactttt 766
|||||||||||||||||||| ||||||||||||| || |||| || || ||||||| |
Sbjct: 16898 atgagaaagaagactggtaa-ttggggtatccacgcagctcatgaagaagtcgaactctc 16956
Query: 767 cattcaaagatttttg-caaaaaaatattccccagaccaatttacatgttg 816
|| |||||||| |||| ||||| | || || |||||||||| |||||||||
Sbjct: 16957 ca-tcaaagatgtttgtcaaaagacta-tcaccagaccaatctacatgttg 17005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,160
Number of Sequences: 1807
Number of extensions: 20160
Number of successful extensions: 203
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)