BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC08FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig994 1568 0.0
>3x_Contig994
Length = 4780
Score = 1568 bits (791), Expect = 0.0
Identities = 820/827 (99%), Gaps = 2/827 (0%)
Strand = Plus / Plus
Query: 87 tatacacaatgctatagccagcacttatctggagaagtcattgggggaaatttcgtatac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 tatacacaatgctatagccagcacttatctggagaagtcattgggggaaatttcgtatac 2559
Query: 147 taccagacaggctgtggtacaaacatataataataccgcattagtttcgggcatatgtat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 taccagacaggctgtggtacaaacatataataataccgcattagtttcgggcatatgtat 2619
Query: 207 gtaatccatactttgaaccattgggtacttgataacaagtctacattcgttgcaagtgtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 gtaatccatactttgaaccattgggtacttgataacaagtctacattcgttgcaagtgtg 2679
Query: 267 atggaagtctgagttattttgtgtgaatcttctgttagtttcacaaaacgtcgatctctc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 atggaagtctgagttattttgtgtgaatcttctgttagtttcacaaaacgtcgatctctc 2739
Query: 327 ttcgtcatcactatcgtcacatatatcctgaattcgaaggatatttaaaatcttctcaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 ttcgtcatcactatcgtcacatatatcctgaattcgaaggatatttaaaatcttctcaaa 2799
Query: 387 tctgaaagcataaatgccacgccactcggttaatcgataaagaaacattagtccagagcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 tctgaaagcataaatgccacgccactcggttaatcgataaagaaacattagtccagagcc 2859
Query: 447 atttgcaaccacaatgcaatttatttcgcgtaagtgacaaaccattattttgttgcttga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 atttgcaaccacaatgcaatttatttcgcgtaagtgacaaaccattattttgttgcttga 2919
Query: 507 gagatcaacacagttgaaattcaagggaaatatcggcctagtaaatgcattcatgataat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 gagatcaacacagttgaaattcaagggaaatatcggcctagtaaatgcattcatgataat 2979
Query: 567 tggatctgttccaagcaaactggtctcaaaagtcgaagtagcctcaaatatgaaattact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 tggatctgttccaagcaaactggtctcaaaagtcgaagtagcctcaaatatgaaattact 3039
Query: 627 tcctgatgtctttgaaaaaaactttggaccatcgttattaaatcttgattcatcgcaaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 tcctgatgtctttgaaaaaaactttggaccatcgttattaaatcttgattcatcgcaaat 3099
Query: 687 ccgaagatatttaattatcgatttatccacgtattcatcaacagcatctttatcaatgcg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 ccgaagatatttaattatcgatttatccacgtattcatcaacagcatctttatcaatgcg 3159
Query: 747 attcagtatagggatatctagttgtctagcggtgaaacaatctttaatatttagaggaga 806
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3160 attcagtatagggatatctagttgtctagcggtgaaacaatctttaatattagaaggaga 3219
Query: 807 aaattctccacttttcaattctgtagatttaatttgagtaaa-ttccaggtcttgtggaa 865
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 3220 aaattctccacttttcaattctgaggatttaatttgagtaaatttccaggtcttgtggaa 3279
Query: 866 gtagatacgtctc-ataaatcagctgagcactcaatattgtctataa 911
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3280 gtagatacgtctcaataaatcagctgagcactcaatattgtctataa 3326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6727
Number of Sequences: 1807
Number of extensions: 6727
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)