BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZC08RM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1441                                                        1164   0.0  

>3x_Contig1441 
          Length = 8574

 Score = 1164 bits (587), Expect = 0.0
 Identities = 641/655 (97%), Gaps = 3/655 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   gaataatagatatgatatgttaccgttaccagaactttaaggactagcaatcaaccagca 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 gaataatagatatgatatgttaccgttaccagaactttaaggactagcaatcaaccagca 2333

                                                                        
Query: 109  tataatcagtttcaacaaaagccactgtcagatttcatttcgacaagatactcaaaataa 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 tataatcagtttcaacaaaagccactgtcagatttcatttcgacaagatactcaaaataa 2273

                                                                        
Query: 169  aacgtttacagctttttaaggtttagatgtttttaccgaaacttaaaataataggaagaa 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 aacgtttacagctttttaaggtttagatgtttttaccgaaacttaaaataataggaagaa 2213

                                                                        
Query: 229  gctgcaaaaaaaaaaaatgaggtaaataaaaatacattacaaaactacaagcaacttcac 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 gctgcaaaaaaaaaaaatgaggtaaataaaaatacattacaaaactacaagcaacttcac 2153

                                                                        
Query: 289  tgaaaagctaagaaaatgcattacatgcgctataacaacacttctactgcttagataacc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 tgaaaagctaagaaaatgcattacatgcgctataacaacacttctactgcttagataacc 2093

                                                                        
Query: 349  cgtggtcttctttaaagccatagcagctataaataatctctgcagagtaattaattagac 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 cgtggtcttctttaaagccatagcagctataaataatctctgcagagtaattaattagac 2033

                                                                        
Query: 409  agcagacataaagacaacttgtatgacacattgggacggattactgttcaattgctgcac 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 agcagacataaagacaacttgtatgacacattgggacggattactgttcaattgctgcac 1973

                                                                        
Query: 469  atttgcaatgatagaacacgcaaaacatgcgcagagtatatgaacagtgagtaaaaatca 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1972 atttgcaatgatagaacacgcaaaacatgcgcagagtatatgaacagtgagtaaaaatca 1913

                                                                        
Query: 529  agaccatgtgacatgaataatctcatttcatcttatatcgggctttcattacccggacat 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 agaccatgtgacatgaataatctcatttcatcttatatcgggctttcattacccggacat 1853

                                                                        
Query: 589  ttgggttttgcttctccaaaagtgaatattcgattgatatattcattcactacacaggac 648
            || |||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||
Sbjct: 1852 tt-ggttttgcttctccaaaagtgattatccgattgatatattcatccactacacaagac 1794

                                                                   
Query: 649  aagc-ttttaaccgggaattaatcagatcattgaatgccgataggccctcatccc 702
            |||| ||  ||||| | ||||||||||||||  ||||| |||||||| |||||||
Sbjct: 1793 aagcattagaaccgtg-attaatcagatcatgaaatgcagataggccttcatccc 1740


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,926
Number of Sequences: 1807
Number of extensions: 12926
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)