BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC09FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1100 1433 0.0
>3x_Contig1100
Length = 4703
Score = 1433 bits (723), Expect = 0.0
Identities = 773/789 (97%), Gaps = 1/789 (0%)
Strand = Plus / Minus
Query: 90 attgatggtttgtatttggccggtcaaataaatggtactactggttatgaagaagcctgc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2970 attgatggtttgtatttggccggtcaaataaatggtactactggttatgaagaagcctgc 2911
Query: 150 gcgcaaggggtggtcgcaggcattaatgctggcttatcagcaagaggacgtcctccgtta 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 gcgcaaggggtggtcgcaggcattaatgctggcttatcagcaagaggacgtcctccgtta 2851
Query: 210 attctttcaatattttactcctatacaggggtgcttattgatgacttaatcacgaaggga 269
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 attctttcaagatctgactcctatacaggggtgcttattgatgacttaatcacgaaggga 2791
Query: 270 gtagaagaaccttatcgtatgtttacatcaaggtccgaatttcgagttacggtcagagcg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 gtagaagaaccttatcgtatgtttacatcaaggtccgaatttcgagttacggtcagagcg 2731
Query: 330 gataatgcagattttaggttaacagaaaaggggaaaaagctaggtgttgtcagtgaagag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 gataatgcagattttaggttaacagaaaaggggaaaaagctaggtgttgtcagtgaagag 2671
Query: 390 cgttggcaacgctttttattggacaaaaccatatacagagaattggagaacactctgaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 cgttggcaacgctttttattggacaaaaccatatacagagaattggagaacactctgaaa 2611
Query: 450 tcttacgtcctatccaaccataaatgggaccagctactcgatgtcgctgtaggatcaacg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 tcttacgtcctatccaaccataaatgggaccagctactcgatgtcgctgtaggatcaacg 2551
Query: 510 cacaaaagccaaaatgcatgggatatgtttaaatttaatggtgtcacgctagattcatta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 cacaaaagccaaaatgcatgggatatgtttaaatttaatggtgtcacgctagattcatta 2491
Query: 570 atcaaagctatcccagatttatctatcgattccagtgaaattccagttcacattttactg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 atcaaagctatcccagatttatctatcgattccagtgaaattccagttcacattttactg 2431
Query: 630 aaaatcaatgtcgaagctaaatatgctccgtatctaaaaagaacaaaccaattcattaag 689
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2430 aaaatcaatgtcgaagctaaatatgctccgtatctaaaaagacaaaaccaattcattaag 2371
Query: 690 gcattccaggcggatgaaaatatgttgctccctttgaattatgactacacanagattcca 749
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2370 gcattccaggcggatgaaaatatgttgctccctttgaattatgactacacaaagattcca 2311
Query: 750 tccattagctctgagtgttaaacgattttgaatactgttcaacctgctactataggggca 809
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 tccattagctctgagtgtaaaacgattttgaatactgttcaacctgctactatagggcag 2251
Query: 810 gcagggagnattcaagggatgacgccagcatcaattttcg-actttataaacttgttcag 868
||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 2250 gcaaggagaattcaagggatgacgccagcatcaattttcgaactttataaacttgtcagg 2191
Query: 869 tctcaacaa 877
|||||||||
Sbjct: 2190 tctcaacaa 2182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5990
Number of Sequences: 1807
Number of extensions: 5990
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)