BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC09RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1225 0.0
>3x_Contig1803
Length = 52241
Score = 1225 bits (618), Expect = 0.0
Identities = 701/721 (97%), Gaps = 8/721 (1%)
Strand = Plus / Minus
Query: 46 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32707 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 32648
Query: 106 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32647 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 32588
Query: 166 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32587 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 32528
Query: 226 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32527 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 32468
Query: 286 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32467 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 32408
Query: 346 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32407 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 32348
Query: 406 gtggtgttgccactcctgccgatgccgctttattaatgcaatt--gggttgtgaaggtgt 463
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32347 gtggtgttgccactcctgccgatgccgctttattaatgcaattgcgggttgtgaaggtgt 32288
Query: 464 atttgtcgggtcaggtatcttcaaatcttctgacccagataagctagctcgtgcaattgt 523
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 32287 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 32228
Query: 524 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32227 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 32168
Query: 584 tgacctaatgggtggattgtcaatagaatcctttgagaactnncganacccctanaa-gt 642
||||||||||||||||||||||||||||||||| |||||| ||| | ||||| || ||
Sbjct: 32167 tgacctaatgggtggattgtcaatagaatccttgaagaact-ccgaaaaccctaaaaggt 32109
Query: 643 tgggcaacatcggctggtagttacgaaacagtatacagcgataggtattttttacatatt 702
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 32108 tggcaaacatcggctggtagttacgaaacagtatacagcgataggta-tttttacatatt 32050
Query: 703 caagtaaagacgaaccaaagtgnatatttgattnttataatgctggctttgttaacaact 762
||||||||||||||| ||||| ||| |||||| |||||||||| |||||||||||||||
Sbjct: 32049 caagtaaagacgaacaaaagtttata-ttgatt-ttataatgct-gctttgttaacaact 31993
Query: 763 t 763
|
Sbjct: 31992 t 31992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6969
Number of Sequences: 1807
Number of extensions: 6969
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)