BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC10FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1136 0.0
>3x_Contig1582
Length = 14087
Score = 1136 bits (573), Expect = 0.0
Identities = 596/604 (98%)
Strand = Plus / Plus
Query: 107 aagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatgatg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatgatg 931
Query: 167 tcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcgac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcgac 991
Query: 227 tcttactttcttgtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatcaaa 286
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 tcttacttcttagtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatcaaa 1051
Query: 287 attccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatgat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 attccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatgat 1111
Query: 347 gaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaaggag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 gaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaaggag 1171
Query: 407 tatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagaccca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 tatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagaccca 1231
Query: 467 cagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatgaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 cagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatgaat 1291
Query: 527 ttagagattaaacctaaccaggaggtgttaattcaaagttttgagttaacgaagacaaaa 586
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1292 ttagagattaaacctaaccaggaggtgttaattcaaagtttcgagttaacgaagacaaaa 1351
Query: 587 catccatctctcatatcgaattggaaggtaacaatgtttaatgtttgtaacaaaatgatt 646
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 1352 catccatctctcatatcgaattgtatggtaacaatgttaaatgtttgtaacaaaatgatt 1411
Query: 647 ncccttgggaactataactacgatatcgattccacctatcgcacagactatgtgagacaa 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 tcccttgggaactataactacgatatcgattccacctatcgcacagactatgtgagacaa 1471
Query: 707 tatg 710
||||
Sbjct: 1472 tatg 1475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7241
Number of Sequences: 1807
Number of extensions: 7241
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)