BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC10RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig939 547 e-155
3x_Contig420 100 1e-20
>3x_Contig939
Length = 3877
Score = 547 bits (276), Expect = e-155
Identities = 279/280 (99%)
Strand = Plus / Minus
Query: 47 gacttcttggtcttccgagcaaccaaatttttaccgccttcatctttggatttctgcaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gacttcttggtcttccgagcaaccaaatttttaccgccttcatctttggatttctgcaaa 303
Query: 107 agttgatagtatgggtcattttccataatcaaataacctctcttttcttcgttacagtaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agttgatagtatgggtcattttccataatcaaataacctctcttttcttcgttacagtaa 243
Query: 167 tattcaatatccttcctctttgtgggtctagcttgtagaggaactcttccgtacttttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tattcaatatccttcctctttgtgggtctagcttgtagaggaactcttccgtacttttct 183
Query: 227 aggaaccaatgtggtgataaatgggctcttagaccaagacggttgaaataacgagcagtg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aggaaccaatgtggtgataaatgggctcttagaccaagacggttgaaataacgagcagtg 123
Query: 287 aaacttccgcctgcatgttcgattgcctcaattgcatcct 326
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 122 aaacttccgcctgcatgttcgattgcctcaatttcatcct 83
>3x_Contig420
Length = 1461
Score = 99.6 bits (50), Expect = 1e-20
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 662 tttgccactggatggacctctacccaatc-tttgtaggtcttcttagaaccctca-ccag 719
||||||||||||||||||||||||||||| ||||||| |||||||||| || ||| ||||
Sbjct: 1457 tttgccactggatggacctctacccaatcttttgtagttcttcttagagccttcacccag 1398
Query: 720 gttttaaa-cacccaggatcgtgatttggc 748
|||||||| |||| ||||||||||||||||
Sbjct: 1397 gttttaaaccaccaaggatcgtgatttggc 1368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6377
Number of Sequences: 1807
Number of extensions: 6377
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 2
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)