BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC11FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1126 743 0.0
3x_Contig406 448 e-126
>3x_Contig1126
Length = 5421
Score = 743 bits (375), Expect = 0.0
Identities = 399/405 (98%), Gaps = 2/405 (0%)
Strand = Plus / Minus
Query: 88 tatacacaaccggtttcc-aacatctggcgacttgaccgtcggttggcttcaaccacatg 146
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tatacacaaccggtttcccaacatctggcgacttgaccgtcggttggcttcaaccacatg 352
Query: 147 acgttgtgagaaccagctggggatccagtggcaccgacataacggtagtcatcgtaggat 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 351 acgttgtgagaaccagctggggaaccagtggcaccgacataacggtagtcatcgtaggat 292
Query: 207 tcaacatngattgggntttccatggtaccgattctggaagagtccaatggcttggtgtcg 266
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcaacaatgattgggttttccatggtaccgattctggaagagtccaatggcttggtgtcg 232
Query: 267 aaaacttcgataccttccaatttacccaacaattccaatctggctaaaccagtggcttgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaaacttcgataccttccaatttacccaacaattccaatctggctaaaccagtggcttgg 172
Query: 327 tccaattcggttggaacttcaccgtctttggcaccaggaccaatcaaagtgtcagcaccg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tccaattcggttggaacttcaccgtctttggcaccaggaccaatcaaagtgtcagcaccg 112
Query: 387 ttaacttcagccaacttggtagcagtcttaacaacttgttgatcacctgcaaccttggtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ttaacttcagccaacttggtagcagtcttaacaacttgttgatcacctgcaaccttggtg 52
Query: 447 gtagcaaaagctctggatgctgggccgaacaacttcgatagggat 491
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51 gtagcaaaagctctggatgctgggccgaacaac-tcgatagggat 8
>3x_Contig406
Length = 2138
Score = 448 bits (226), Expect = e-126
Identities = 305/327 (93%), Gaps = 4/327 (1%)
Strand = Plus / Minus
Query: 611 tcaattagcaatatatgacaaaaa-gaacc-acttggatactgtaagctagctgagacag 668
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 2138 tcaattagcaatatatgacaaaaaagaacccacttggatactgtaagctagctgagacag 2079
Query: 669 ataaggtgatcagttgaatatattcgcaaatgaaagtaatcggcgaaagaaaaccctctg 728
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2078 ataaggtgataagttgaatatattcccaaatgaaagtaatcggcgaaagaaaaccctctg 2019
Query: 729 aaacaaacgtatgactctcttgaacanacttgataaaacgtctttagctactttctaana 788
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 2018 aaacaaacgtatgactctcttgaacaaacttgataaaacgtctttagctactttctaaaa 1959
Query: 789 ctctgaaatcactgttgaaaatattattcatatatatacattcggttcccatatcctgcg 848
||||||||||||| || |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 1958 ctctgaaatcactttttaaaatatttttcttatatatacattcggttccaatatcctgcg 1899
Query: 849 aaaatcaaaaaatgaaaattatcgcttatanacaaaaacgtaccaaaatcacttc-atgt 907
|||||||| ||||||||||||||||||||| |||||||||| |||||||| || |||
Sbjct: 1898 aaaatcaagaaatgaaaattatcgcttataacaaaaaacgtacaaaaatcacatctatg- 1840
Query: 908 tttcccatattgattggagcagggaga 934
||||||| |||||||||||||||||
Sbjct: 1839 tttcccagtatgattggagcagggaga 1813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6536
Number of Sequences: 1807
Number of extensions: 6536
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)