BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZC11RM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1682                                                         950   0.0  

>3x_Contig1682 
          Length = 16889

 Score =  950 bits (479), Expect = 0.0
 Identities = 500/507 (98%)
 Strand = Plus / Plus

                                                                         
Query: 47    taagacacaacacccatttctttattgaattcttcgctatggatcttttgacccataacg 106
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14798 taagacacaacacccatttctttattgaattcttcgctatggatcttttgacccataacg 14857

                                                                         
Query: 107   gtgaagtcgttggtgttatggcttacaaccaagaagacggtaccatccacagattccgtg 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14858 gtgaagtcgttggtgttatggcttacaaccaagaagacggtaccatccacagattccgtg 14917

                                                                         
Query: 167   ctcacaagaccattatcgctactggtgggtacggtcgtgcctacttctcttgtacatctg 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14918 ctcacaagaccattatcgctactggtgggtacggtcgtgcctacttctcttgtacatctg 14977

                                                                         
Query: 227   ctcatacttgtacaggtgatggttatgctatggtttctcgtgctggtttcccattgcaag 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14978 ctcatacttgtacaggtgatggttatgctatggtttctcgtgctggtttcccattgcaag 15037

                                                                         
Query: 287   atttggaatttattcaattccatccttccggtatctacggttccggttgtttgatcactg 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15038 atttggaatttattcaattccatccttccggtatctacggttccggttgtttgatcactg 15097

                                                                         
Query: 347   aaggtgctcgtggtgagggtggtttcttggttaactctgaaggtgaacgtttcatggaac 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15098 aaggtgctcgtggtgagggtggtttcttggttaactctgaaggtgaacgtttcatggaac 15157

                                                                         
Query: 407   gttatgctccaactgctaaggatttagcttgtagagacgttgtttctcgtgccatcacca 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15158 gttatgctccaactgctaaggatttagcttgtagagacgttgtttctcgtgccatcacca 15217

                                                                         
Query: 467   tggaaatcagagaaagtagaagtgttggttcagaataggatcacatgttcttgcaattga 526
             |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 15218 tggaaatcagagaaggtagaggtgttggtccagaaaaggatcacatgttcttgcaattga 15277

                                        
Query: 527   accattttgcaccttttgtgcttcatg 553
             |||||||  |||||| |||||||||||
Sbjct: 15278 accatttgccaccttctgtgcttcatg 15304


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6205
Number of Sequences: 1807
Number of extensions: 6205
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)