BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC12FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1586 0.0
>3x_Contig1294
Length = 6938
Score = 1586 bits (800), Expect = 0.0
Identities = 870/885 (98%), Gaps = 7/885 (0%)
Strand = Plus / Plus
Query: 88 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 4392
Query: 148 tccctttactcaagatctttgatcactcgaaata-tcgggcagggccctttattcgcaag 206
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4393 tccctttactcaagatctttgatcactcgaaataatcgggcagggccctttattcgcaag 4452
Query: 207 aacaacttttatttttttacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 266
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 aacaacttttagattattacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 4512
Query: 267 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 4572
Query: 327 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 4632
Query: 387 ttataatggaaaatgatatctaagaacatattaagtgcgaatctccagttagaaagatcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4633 ttataatggaaaatgatatctaagaacatattaagtgcgaatctccagttagaaagatcg 4692
Query: 447 attaagacggaggataagacaaccaaatagggaattagaggtgaacggatgctatatttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 attaagacggaggataagacaaccaaatagggaattagaggtgaacggatgctatatttc 4752
Query: 507 ggatgcaaggagtgatggatgataaaaatgtggcaaaacacataaaattttgtcaaagac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4753 ggatgcaaggagtgatggatgataaaaatgtggcaaaacacataaaattttgtcaaagac 4812
Query: 567 atttgcaattgttgccgtctcatcgcctggatatagatcccaataggttagccattgcgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 atttgcaattgttgccgtctcatcgcctggatatagatcccaataggttagccattgcgt 4872
Query: 627 tctattcgttgacagcgattgagctattgggcaagccagtgcgcaaggacttccaataca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 tctattcgttgacagcgattgagctattgggcaagccagtgcgcaaggacttccaataca 4932
Query: 687 gtttggattggattagatcgtgctatattgaacttgctgattactctggctttgccatcc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933 gtttggattggattagatcgtgctatattgaacttgctgattactctggctttgccatcc 4992
Query: 747 cgtcttttagacacgctaagcaattgactactantaatttaccaaatacattatttggga 806
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 4993 cgtcttttagacacgctaagcaattgactactataaatttaccaaatacattattt-gga 5051
Query: 807 ctaatatgtcttatgttgttggggggatcacgaaatctttgatgagaagttgaaccgtga 866
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 5052 ctaatatgtcttatgttgtt-gggggatcacgaattctttgatgagaagttgaaccgtga 5110
Query: 867 tacgttgggc-aattcatctcatcttgtcagttacctgatgggtcatttacctctttnct 925
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5111 tacgttgggcaaattcatctcatcttgtcagttacctgatgggtcatttacctcttttct 5170
Query: 926 ggat-atgctggat-tccatcgnagttcgatt-ccatgatctgag 967
|||| ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct: 5171 ggataatgctggatatccatcgaagttcgattcccatgatctgag 5215
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6656
Number of Sequences: 1807
Number of extensions: 6656
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)