BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZC12RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1012 831 0.0
>3x_Contig1012
Length = 3540
Score = 831 bits (419), Expect = 0.0
Identities = 450/455 (98%), Gaps = 4/455 (0%)
Strand = Plus / Plus
Query: 48 ttagtttgttgtacagttactctactattattgttctcgtcaagatgaaggtaagtctac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3087 ttagtttgttgtacagttactctactattattgttctcgtcaagatgaaggtaagtctac 3146
Query: 108 tcctcttctccgaaagacgaatcaagtaatgtgtatataaggcaatgcagagaaatattc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 tcctcttctccgaaagacgaatcaagtaatgtgtatataaggcaatgcagagaaatattc 3206
Query: 168 caaattgtaagagtttgtttaggcgtggtacataggaaagaactagttgatgagattatc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 caaattgtaagagtttgtttaggcgtggtacataggaaagaactagttgatgagattatc 3266
Query: 228 cagtatacaatagaactgaactggggtagattagataagaactgacaggataactatgac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 cagtatacaatagaactgaactggggtagattagataagaactgacaggataactatgac 3326
Query: 288 acatagtctagaggaaaatatatgaaattaaaatgggcaacaagccagcgagtgttgatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 acatagtctagaggaaaatatatgaaattaaaatgggcaacaagccagcgagtgttgatc 3386
Query: 348 ttccaacgtgatttccgtgccct-tggaatgtcaatagagatgttgtggatgaagatggc 406
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3387 ttccaacgtgatttccgtgccctatggaatgtcaatagagatgttgtggatgaagatggc 3446
Query: 407 ggtgg-tttttggaagttagatggaattgaaaaagttcttatggcagggaaagtgt-ttg 464
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3447 ggtggttttttggaagttagatggaattgaaaaagttcttatggcagggaaagtgtattg 3506
Query: 465 aagtgatcgatgctgttccttgcggagtgtccgtg 499
||||||||||||||||| || ||||||||||||||
Sbjct: 3507 aagtgatcgatgctgtt-ctagcggagtgtccgtg 3540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6372
Number of Sequences: 1807
Number of extensions: 6372
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)