BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD01FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1514 1594 0.0
>3x_Contig1514
Length = 10546
Score = 1594 bits (804), Expect = 0.0
Identities = 825/830 (99%), Gaps = 2/830 (0%)
Strand = Plus / Minus
Query: 86 aacagtcttctaccttctatttcgatactaatcagcctaaaatatggcaaacagatcgct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3241 aacagtcttctaccttctatttcgatactaatcagcctaaaatatggcaaacagatcgct 3182
Query: 146 tggcagatacaataaatattggatataattatttgaacgcgtttgatcactggatgttgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3181 tggcagatacaataaatattggatataattatttgaacgcgtttgatcactggatgttgt 3122
Query: 206 gaatttcacaagtacagaatgaccgttgctcctgatgatgaagtaactccctacaagtat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3121 gaatttcacaagtacagaatgaccgttgctcctgatgatgaagtaactccctacaagtat 3062
Query: 266 tggcttacaacttttctagctattttgtgctaatgctcatcgcatccatcaaaattgctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 tggcttacaacttttctagctattttgtgctaatgctcatcgcatccatcaaaattgctt 3002
Query: 326 gatgtttcctcaaaggatctgaaaaaaaaaaaagaaagacacaatcttggtcacgtgata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 gatgtttcctcaaaggatctgaaaaaaaaaaaagaaagacacaatcttggtcacgtgata 2942
Query: 386 ttggtcattgaatatgaagattattgtattaggtatatgtaagttattgagcttattatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 ttggtcattgaatatgaagattattgtattaggtatatgtaagttattgagcttattatc 2882
Query: 446 attattccgctagttttctgtattcatccttcatctgctgtatcagctctggtatctttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 attattccgctagttttctgtattcatccttcatctgctgtatcagctctggtatctttt 2822
Query: 506 cttcctgaagataattgagcctttctgagtagtaatgattggctagcgttatcaagtttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 cttcctgaagataattgagcctttctgagtagtaatgattggctagcgttatcaagtttt 2762
Query: 566 taggttcttgtatatttgtattggtgaaaaggtcagatattaaacccttgattgatctta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 taggttcttgtatatttgtattggtgaaaaggtcagatattaaacccttgattgatctta 2702
Query: 626 tgttgaggggcgcaagctcaggtgcatagatttggaccatactatgtgatgtaaatttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 tgttgaggggcgcaagctcaggtgcatagatttggaccatactatgtgatgtaaatttct 2642
Query: 686 ctaccactgtattatccactattggttccactaaaagctcatcgagtgacaaagaagaat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 ctaccactgtattatccactattggttccactaaaagctcatcgagtgacaaagaagaat 2582
Query: 746 ctgcatgtgctagttcctgctggtgatataatgtgatttgtaagagaagaagtgcaatcg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 ctgcatgtgctagttcctgctggtgatataatgtgatttgtaagagaagaagtgcaatcg 2522
Query: 806 agtcattttgggtactcatactatgggattttcgggctagnttcaaatgcagctagcgta 865
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2521 agtcattttgggtactcatactat-ggattttcgggctagtttcaaatgcagctagcgta 2463
Query: 866 caatgaagtttactttggctctactctttgntnctggatgtatcaatagg 915
|||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 2462 caatgaagtttactttggctctactctttgct-ctgtatgtatcaatagg 2414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,414
Number of Sequences: 1807
Number of extensions: 13414
Number of successful extensions: 169
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)