BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD01RM1.SCF screened BAC_end
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1318 0.0
>3x_Contig1542
Length = 13810
Score = 1318 bits (665), Expect = 0.0
Identities = 756/781 (96%), Gaps = 5/781 (0%)
Strand = Plus / Plus
Query: 47 aaacgatccgatgtacttgatccactcgaaaaggagagacgagatgtggaagaattccta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5980 aaacgatccgatgtacttgatccactcgaaaaggagagacgagatgtggaagaattccta 6039
Query: 107 tcaaatcagatagaggaactagaaagacaatttgatctactccaaattgatgtagacagg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6040 tcaaatcagatagaggaactagaaagacaatttgatctactccaaattgatgtagacagg 6099
Query: 167 ctgatattgttgcaaaagaagagaaaaacagcaactccagaaaatgaaaaagaactgcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6100 ctgatattgttgcaaaagaagagaaaaacagcaactccagaaaatgaaaaagaactgcaa 6159
Query: 227 cgcttcaaggatctacagggaagatacaggtatcaccagcaacaaatggaattggcttta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6160 cgcttcaaggatctacagggaagatacaggtatcaccagcaacaaatggaattggcttta 6219
Query: 287 aggttgattgcgaacgaagagcttgaaccgcaacaggttagagatattgaagaggagata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6220 aggttgattgcgaacgaagagcttgaaccgcaacaggttagagatattgaagaggagata 6279
Query: 347 ttattctacgttgaagaaaaccaaaccgaagggtttgtagaagatgacagtatttatgaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6280 ttattctacgttgaagaaaaccaaaccgaagggtttgtagaagatgacagtatttatgaa 6339
Query: 407 ggtttagatttacaatcgaatgaagcaattgctcacgaagtagctgctgcatttgcatct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6340 ggtttagatttacaatcgaatgaagcaattgctcacgaagtagctgctgcatttgcatct 6399
Query: 467 agagcagcaggtgatgcgagtggagatgataatgaaagtaaagacggcaaactttcgaaa 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6400 agagcagcaggtgatgcgagtggagatgataatgaaagtaaagacggcaaactttcgaag 6459
Query: 527 gaagagctcangagattggnaagagaggctaagaagaatgctaangcagctgccaagact 586
||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 6460 aaagagctcaggagattggaaagagaggctaagaagaatgctaaggcagctgccaagact 6519
Query: 587 actgccctagatgagaaccccacaccctgt-ataacgggncaagaaacttcctgacctgg 645
|||||||||||||||||||| ||| ||||| |||||||| ||||||||| ||||||||||
Sbjct: 6520 actgccctagatgagaacccaaca-cctgtaataacggg-caagaaactccctgacctgg 6577
Query: 646 caaatgaaatgcaggaagctgattctcangacagcatcacgatacctgaaacacccacac 705
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 6578 caaatgaaatgcaggaagctgattctcaggacagcatcacgatacctgaaacaccaacac 6637
Query: 706 caccggcgtcaaaaagtgtattcgcgtcttcttcagtcacagcaaggtcagccaatgttc 765
||||| ||||||||||||||| ||||| || ||||||||||| |||||||||||| ||
Sbjct: 6638 caccgccgtcaaaaagtgtatcgccgtctcctccagtcacagcagggtcagccaatg-tc 6696
Query: 766 ctttttacgacagctaatactacagcttcttcaaaaccacattactccgttagcaaagtc 825
| | ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 6697 cctcttacgacagctaatactacagctccttcaaagccaca-tactccgttagcaaagtc 6755
Query: 826 a 826
|
Sbjct: 6756 a 6756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6794
Number of Sequences: 1807
Number of extensions: 6794
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)