BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZD02FM1.SCF screened BAC_end
         (901 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1560                                                        1560   0.0  
3x_Contig32                                                           718   0.0  

>3x_Contig1560 
          Length = 9209

 Score = 1560 bits (787), Expect = 0.0
 Identities = 807/815 (99%)
 Strand = Plus / Minus

                                                                        
Query: 86   aacattaaaatgaactgaaaaagaagagaagcaattgaattgttttaaattatcaggatc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4182 aacattaaaatgaactgaaaaagaagagaagcaattgaattgttttaaattatcaggatc 4123

                                                                        
Query: 146  gtgatgcttttttacattacatctaggtttgagtatttggtggcacttatcttgtttgca 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4122 gtgatgcttttttacattacatctaggtttgagtatttggtggcacttatcttgtttgca 4063

                                                                        
Query: 206  gtgacacttttatttaatggtatttacacggtatcctgtccagccacgaacaaaaatgta 265
            |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4062 gtgacactttaaaataatggtatttacacggtatcctgtccagccacgaacaaaaatgta 4003

                                                                        
Query: 266  accggtaccttcccttataagttctagaagtctttcgcggatgtttttgcactcctctat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 accggtaccttcccttataagttctagaagtctttcgcggatgtttttgcactcctctat 3943

                                                                        
Query: 326  caattgttcatttttcaaagtgatgacgtgcatttgtttttcggattcaatctttgtttg 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3942 caattgttcatttttcaaagtgatgacgtgcatttgtttttcggattcaatctttgtttg 3883

                                                                        
Query: 386  attattactttgatattttctatctaaaaaactgattgtcttggtgtcaattttacaatt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 attattactttgatattttctatctaaaaaactgattgtcttggtgtcaattttacaatt 3823

                                                                        
Query: 446  tttgtcaccgtcaataaaaatattatctgaatacgaagtcgaagagtcaactgctggctt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 tttgtcaccgtcaataaaaatattatctgaatacgaagtcgaagagtcaactgctggctt 3763

                                                                        
Query: 506  acctctagtagtataggcatcaaaattgaaatcaaatacttgctcatattctccgacacc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 acctctagtagtataggcatcaaaattgaaatcaaatacttgctcatattctccgacacc 3703

                                                                        
Query: 566  tttgcttgtaaccaaccaatgctcaaaatttttaaaatctgaatcattaaggacaagtga 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 tttgcttgtaaccaaccaatgctcaaaatttttaaaatctgaatcattaaggacaagtga 3643

                                                                        
Query: 626  cgctctcttgatttcatttaattttcttcttttctcttctcttaattntctttttctagt 685
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3642 cgctctcttgatttcatttaattttcttcttttctcttctcttaattttctttttctagt 3583

                                                                        
Query: 686  ttcggattcataagagccacttggatgaataacccaccttgttacatccacttgtgccat 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3582 ttcggattcataagagccacttggatgaataacccaccttgttacatccacttgtgccat 3523

                                                                        
Query: 746  ttttatgatttttctttgattntgggttagtaaaatgattaatattgttctaaaccattt 805
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3522 ttttatgatttttctttgattttgggttagtaaaatgattaatattgttctaaaccattt 3463

                                                                        
Query: 806  caatacttancaattccataaattaatcgatgatttaattttatggtgctgttgaatatt 865
            |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3462 caatacttacaaattccataaattaatcgatgatttaattttatggtgctgttgaatatt 3403

                                               
Query: 866  ggattgggctgatgtcgntaatttcattcttcaat 900
            ||||||||||||||||| |||||||||||||||||
Sbjct: 3402 ggattgggctgatgtcgttaatttcattcttcaat 3368


>3x_Contig32 
          Length = 894

 Score =  718 bits (362), Expect = 0.0
 Identities = 388/394 (98%), Gaps = 2/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 238 atcctgtccagccacgaacaaaaatgtaaccggtaccttcc-cttataagttctagaagt 296
           ||||| |||| |||| ||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 393 atcctttccatccactaacaaaaatttaaccg-taccttccgcttataagttctagaagt 335

                                                                       
Query: 297 ctttcgcggatgtttttgcactcctctatcaattgttcatttttcaaagtgatgacgtgc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctttcgcggatgtttttgcactcctctatcaattgttcatttttcaaagtgatgacgtgc 275

                                                                       
Query: 357 atttgtttttcggattcaatctttgtttgattattactttgatattttctatctaaaaaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttgtttttcggattcaatctttgtttgattattactttgatattttctatctaaaaaa 215

                                                                       
Query: 417 ctgattgtcttggtgtcaattttacaatttttgtcaccgtcaataaaaatattatctgaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctgattgtcttggtgtcaattttacaatttttgtcaccgtcaataaaaatattatctgaa 155

                                                                       
Query: 477 tacgaagtcgaagagtcaactgctggcttacctctagtagtataggcatcaaaattgaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tacgaagtcgaagagtcaactgctggcttacctctagtagtataggcatcaaaattgaaa 95

                                                                       
Query: 537 tcaaatacttgctcatattctccgacacctttgcttgtaaccaaccaatgctcaaaattt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  tcaaatacttgctcatattctccgacacctttgcttgtaaccaaccaatgctcaaaattt 35

                                             
Query: 597 ttaaaatctgaatcattaaggacaagtgacgctc 630
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  ttaaaatctgaatcattaaggacaagtgacgctc 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8732
Number of Sequences: 1807
Number of extensions: 8732
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)