BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD02RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 192 9e-49
3x_Contig304 145 2e-34
>3x_Contig1778
Length = 27694
Score = 192 bits (97), Expect = 9e-49
Identities = 203/229 (88%), Gaps = 7/229 (3%)
Strand = Plus / Plus
Query: 467 ttatactggatctcttctgaattgtctccgaattttc-tggcagagaagtccttttccaa 525
||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||
Sbjct: 1 ttatactggatctcttctgaattgtctccgaattttcttggcggagaggtcctttcccaa 60
Query: 526 tctttc-atatttcttctggagtcttgacgccta-tgcctcat-attagaatcc-aatta 581
|||||| ||||||||||||||||||||||||||| |||||||| || ||||||| ||| |
Sbjct: 61 tctttcaatatttcttctggagtcttgacgcctagtgcctcataataagaatccaaatca 120
Query: 582 atgtctgacatgacctgcccacacttaaaacacctatatcttttccgggggttctttcgt 641
|||||||||||||||||| |||||||||||||||||||| | ||| | |||||||||||
Sbjct: 121 atgtctgacatgacctgcacacacttaaaacacctatattctctcc-gtggttctttcgt 179
Query: 642 tcgaaaaattttatatctttggatttaccccacgaattagttagtaaat 690
|||| || | || ||||||||||| || | ||||| |||| |||||||
Sbjct: 180 tcgacgaa-tatagatctttggattaacacaacgaaatagtaagtaaat 227
>3x_Contig304
Length = 1230
Score = 145 bits (73), Expect = 2e-34
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 48 agcttcgtgttaacggtaaaacataatggtcaaaattttctcgaggatcgtaaattgtaa 107
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 77 agcttcgtgttaacggtaaaacagaatggtcaaaattttctcgaggatcgtaaattgtaa 18
Query: 108 taccgatttctgttacg 124
|||||||||||||||||
Sbjct: 17 taccgatttctgttacg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6985
Number of Sequences: 1807
Number of extensions: 6985
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)