BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD04FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig785 1090 0.0
3x_Contig686 494 e-139
>3x_Contig785
Length = 2769
Score = 1090 bits (550), Expect = 0.0
Identities = 550/550 (100%)
Strand = Plus / Plus
Query: 85 tctacacctttcaaataatcttgcacttcatcaccggtcttattcttacccaaattgacc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 tctacacctttcaaataatcttgcacttcatcaccggtcttattcttacccaaattgacc 2279
Query: 145 cccaacaatttgtctttgtataaggacaagttttcaacggaattgtccttaaacatgtaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 cccaacaatttgtctttgtataaggacaagttttcaacggaattgtccttaaacatgtaa 2339
Query: 205 ctgttgatgaaactggtaatacgggattgtaatgtgttgacaacggtgtcatggccggat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 ctgttgatgaaactggtaatacgggattgtaatgtgttgacaacggtgtcatggccggat 2399
Query: 265 gaattgaaaccgtatctgttgataacagcatcatccaaaggtaatctaaagaatctaggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 gaattgaaaccgtatctgttgataacagcatcatccaaaggtaatctaaagaatctaggt 2459
Query: 325 cttgggtttcctggttgtggtaatggagtcacagaaccaatctctatataaccgaatcct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2460 cttgggtttcctggttgtggtaatggagtcacagaaccaatctctatataaccgaatcct 2519
Query: 385 ccggaaagtataccgtcgatggcatcaccatttttatccaaaccggcagcacaaccaatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 ccggaaagtataccgtcgatggcatcaccatttttatccaaaccggcagcacaaccaatt 2579
Query: 445 ggattggtcaatttcttaccaaaaatgttcacattcaataccttatcatcgttatcgaac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2580 ggattggtcaatttcttaccaaaaatgttcacattcaataccttatcatcgttatcgaac 2639
Query: 505 cataatcttggagccaacccattcttcaagaaccagatacctaatttatgcccatcttca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2640 cataatcttggagccaacccattcttcaagaaccagatacctaatttatgcccatcttca 2699
Query: 565 gcatctggcgttacaagtctcaacatcgggcacaagacgtactcatggaaagcagacctc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2700 gcatctggcgttacaagtctcaacatcgggcacaagacgtactcatggaaagcagacctc 2759
Query: 625 gaattggaga 634
||||||||||
Sbjct: 2760 gaattggaga 2769
>3x_Contig686
Length = 3201
Score = 494 bits (249), Expect = e-139
Identities = 297/307 (96%), Gaps = 5/307 (1%)
Strand = Plus / Minus
Query: 619 gacctcgaattggagaaatagaatcccgcaaatgaaccaatggctatcccaacagtgtac 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3201 gacctcgaattggagaaatagaatcccgcaaatgaaccaatggctatcccaacagtgtac 3142
Query: 679 ttcaaaagcttagggccagaaatgcctgctttcaatgggaccatgccattcttgacaaag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3141 ttcaaaagcttagggccagaaatgcctgctttcaatgggaccatgccattcttgacaaag 3082
Query: 739 -actgcgattgatttagcgtaaaaagtttcttgctcaaaatacgtgggaacccactattc 797
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3081 aactgcgattgatttagcgtaaaaagtttcttgctcaaaatacgtgggaacccactattc 3022
Query: 798 atagttgataaaagcaaaatacgcggttattcggagtgacctctacttgcctattccaa- 856
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3021 atagttgataaaagcaaaatacgcgg-tattcggagtgacctctacttgcctattccaat 2963
Query: 857 cttgtntacaaaga-aaaagaac-acgattcacgatctanctctctattcattgcgggag 914
||||| || |||| |||||||| ||||| ||||||||| ||||||||||||||||||||
Sbjct: 2962 cttgtataacaagagaaaagaacaacgatacacgatctagctctctattcattgcgggag 2903
Query: 915 gaccaaa 921
|||||||
Sbjct: 2902 gaccaaa 2896
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6298
Number of Sequences: 1807
Number of extensions: 6298
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)