BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD04RM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig918 1253 0.0
>3x_Contig918
Length = 2482
Score = 1253 bits (632), Expect = 0.0
Identities = 723/746 (96%), Gaps = 7/746 (0%)
Strand = Plus / Minus
Query: 49 tcaacacgatatatacgtgcatgttgccaccgacaatgaaacagcaatagaatggtatga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 tcaacacgatatatacgtgcatgttgccaccgacaatgaaacagcaatagaatggtatga 1706
Query: 109 gaagaatggcttttccagggatggtgacattttggaaaactattacaagaataccactgg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 gaagaatggcttttccagggatggtgacattttggaaaactattacaagaataccactgg 1646
Query: 169 atctaatgatgcatttgtatataagaagtcagtatgaatatatatctacatatgaaaagc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 atctaatgatgcatttgtatataagaagtcagtatgaatatatatctacatatgaaaagc 1586
Query: 229 cctgtcaatttagtgatggttaatgcgtgctcagataatttattaggaactgtaagtaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 cctgtcaatttagtgatggttaatgcgtgctcagataatttattaggaactgtaagtaaa 1526
Query: 289 aagttaatctgtcttggaggatttttcagtggtttcctcagttgcttcatgttcatcttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 aagttaatctgtcttggaggatttttcagtggtttcctcagttgcttcatgttcatcttc 1466
Query: 349 agtatcagtatctatatcagtgaaatcagagtcctcttctagatcatcaccatcggattc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 agtatcagtatctatatcagtgaaatcagagtcctcttctagatcatcaccatcggattc 1406
Query: 409 atcaaagtcttcggaggaatatccagtattttcttcgccttcatttcctgaatcgtcaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 atcaaagtcttcggaggaatatccagtattttcttcgccttcatttcctgaatcgtcaga 1346
Query: 469 gtctagttcttccaatatctccttcttaggatctgtttcaattggagtatttttcacagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 gtctagttcttccaatatctccttcttaggatctgtttcaattggagtatttttcacagt 1286
Query: 529 caatggaacagtgaagtctaaatcagaaccaaagtaatctggagacttgataacgactct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 caatggaacagtgaagtctaaatcagaaccaaagtaatctggagacttgataacgactct 1226
Query: 589 gaag-aatatgtgccttcttctttaagagcangctgagcgaaaggaattgag-aagtgcc 646
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 1225 gaagaaatatgtgccttcttctttaggagcaggctgagcgaaaggaattgagaaagtgcc 1166
Query: 647 gatggtccaatctttagcgttaaattccttggctaaatcttt-ataactcctttattcgg 705
||||||||| |||| |||||||||||||||| |||||||||| ||||||| |||| |||
Sbjct: 1165 gatggtccagtcttcagcgttaaattccttgtctaaatctttaataactctttta-tcga 1107
Query: 706 aattgacattccaattttcttagggacaatctttgggcccaacttggggggtttgaatta 765
||||||||| | ||||||| ||||||||||||||||||| | ||| |||||||||||||
Sbjct: 1106 aattgacatccaaattttc-tagggacaatctttgggccaagctt--ggggtttgaatta 1050
Query: 766 atttaccattcctttttgaaaccact 791
|||||||| | ||| ||| ||||||
Sbjct: 1049 ttttaccatccttttgtgataccact 1024
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6916
Number of Sequences: 1807
Number of extensions: 6916
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)