BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD05RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1338 0.0
>3x_Contig1775
Length = 26320
Score = 1338 bits (675), Expect = 0.0
Identities = 762/791 (96%), Gaps = 1/791 (0%)
Strand = Plus / Minus
Query: 45 ctccgactcttctcccagatctaacagcagtcttggtagtggtctgagtggcatggttca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12931 ctccgactcttctcccagatctaacagcagtcttggtagtggtctgagtggcatggttca 12872
Query: 105 tagcaatagtagcagtagatcttagagctttagtgaagaacattgtgtattatttgattt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12871 tagcaatagtagcagtagatcttagagctttagtgaagaacattgtgtattatttgattt 12812
Query: 165 ggtttggttaatttccttgttttggtttggtttgtgtggtatgacactttaacttataca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12811 ggtttggttaatttccttgttttggtttggtttgtgtggtatgacactttaacttataca 12752
Query: 225 caataggaaattgacacaataagatgtccgtttacaagggaatgtccatctcttatatac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12751 caataggaaattgacacaataagatgtccgtttacaagggaatgtccatctcttatatac 12692
Query: 285 taaatagctccaagtgtttcaagtgtccaccaaatggaaacccacaaaactatcgaacca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12691 taaatagctccaagtgtttcaagtgtccaccaaatggaaacccacaaaactatcgaacca 12632
Query: 345 ctaaatcgaaagatattgagcaatttcacctaccttcgatggaaattgacatgttccccc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12631 ctaaatcgaaagatattgagcaatttcacctaccttcgatggaaattgacatgttccccc 12572
Query: 405 tactgtgccagtttaatcatgccgacagtaaataacaccacttccatactaaaaaaaaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12571 tactgtgccagtttaatcatgccgacagtaaataacaccacttccatactaaaaaaaaat 12512
Query: 465 gttcgataaaaaaagtatcaccacatctgtgtcaaatggcgagagataagagcaaggcac 524
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12511 gttcgataaaaaaagtatcaccacatctgtgtcaaatggcgagagaaaagagcaaggcac 12452
Query: 525 aaaaaaggtaaggaaaaatctaaagaggtggngatatcangttcctatggggggttgctt 584
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 12451 aaaaaaggtaaggaaaaatctaaagaggtggggatatcaggttcctatggggggttgctt 12392
Query: 585 tcatttcgaaacggaaccatcaagtatgttgtgcctgtttcccccgtgatttcttgttca 644
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12391 tcattcggaaacggaaccatcaagtatgttgtgcctgtttcccccgtgattccttgttca 12332
Query: 645 aggttctctgttcttttctacaacngnagtataaagtatatccgatgtacttaggattat 704
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||
Sbjct: 12331 gggttctctgttcttttctacaacggaagtataaagtatatcggatgtacttaggataat 12272
Query: 705 cttaagattctacattggaagcacttgtagacacttgtagatgctgggaaatgcttttac 764
| ||||||||||||||| | ||||||||||||||||||||||||||| | |||||| |||
Sbjct: 12271 cataagattctacattgaaggcacttgtagacacttgtagatgctggtagatgcttctac 12212
Query: 765 ttttcagcagcatttttttaatttttacaataccgttggcccactccctgggccactttt 824
| |||||||||| | | || ||||||||||||| |||| || ||||||||| ||| |||
Sbjct: 12211 tattcagcagca-tctcttcatttttacaatactgttgtccgactccctggtgcacattt 12153
Query: 825 tttgggaactt 835
||||||||||
Sbjct: 12152 cttgggaactt 12142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8882
Number of Sequences: 1807
Number of extensions: 8882
Number of successful extensions: 133
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)