BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD06FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1552 0.0
>3x_Contig1519
Length = 9351
Score = 1552 bits (783), Expect = 0.0
Identities = 855/874 (97%), Gaps = 5/874 (0%)
Strand = Plus / Minus
Query: 86 tacgggatgatgatttccatgatgatgaaatacagctggaaacttaccatccgaatatgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8706 tacgggatgatgatttccatgatgatgaaatacagctggaaacttaccatccgaatatgg 8647
Query: 146 taaaacccacatatgacaactataatgttccttctccatcacattctcccacaagagata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8646 taaaacccacatatgacaactataatgttccttctccatcacattctcccacaagagata 8587
Query: 206 gatattatcacggtggtgcataccagaacgtccccacgtcaaatgagaatccgttctacc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8586 gatattatcacggtggtgcataccagaacgtccccacgtcaaatgagaatccgttctacc 8527
Query: 266 aaaacacagcatattatccggaagaaacaactaggcctcaagtttatccacggtatagct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8526 aaaacacagcatattatccggaagaaacaactaggcctcaagtttatccacggtatagct 8467
Query: 326 agatgaatcaacttagttcaggaaacaaagtaacggtatcacaccagtgcgaaccgtcac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8466 agatgaatcaacttagttcaggaaacaaagtaacggtatcacaccagtgcgaaccgtcac 8407
Query: 386 tttgtcactcggagtggtcgattcgaattttattttggttatgtacgtttttatatgtta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8406 tttgtcactcggagtggtcgattcgaattttattttggttatgtacgtttttatatgtta 8347
Query: 446 cacttttcggtattttgtatgaatatagtctgtaaggcaagtttatttgacgttttcagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8346 cacttttcggtattttgtatgaatatagtctgtaaggcaagtttatttgacgttttcagc 8287
Query: 506 aatggtttctcttattgaacagatagatgcctgtaaattttcatgagcggattgattcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8286 aatggtttctcttattgaacagatagatgcctgtaaattttcatgagcggattgattcaa 8227
Query: 566 tgaccttaattgaatcttcaatcccttttcaataatatcgtcataaagggcagaggattg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8226 tgaccttaattgaatcttcaatcccttttcaataatatcgtcataaagggcagaggattg 8167
Query: 626 ttctaccacatctttaggtaaaacgtctcttttgattgcggatagagcattgttccacgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8166 ttctaccacatctttaggtaaaacgtctcttttgattgcggatagagcattgttccacgt 8107
Query: 686 gtttggtgttaattgactgntaacagtgcctgncagaatccatggaagagtcaacctaac 745
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 8106 gtttggtgttaattgactgtaaacagtgcctgcaagaatccatggaagagtcaacctaac 8047
Query: 746 tggcagatttgttagaagtttagagaattgtgagggcgttctcttcagtatacctgattt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8046 tggcagatttgttagaagtttagagaattgtgagggcgttctcttcagtatacctgattt 7987
Query: 806 atcactatttcaagggagattggaaaccccagtttctttttgcttgatacccacggaacc 865
||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 7986 atcactattccaa-ggagattggaaaccccagtttc-ttttgcttgata-ccacggaacc 7930
Query: 866 cgagaaacacgctccccaaagc-natacacttgcagtgacaatatgttcatccacttcct 924
|||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7929 gaagaaccacgct-cccaaagcaaatacacttgcagtgacaatatgttcatccacttcct 7871
Query: 925 ttctatcgntaagaacgttgnctcttcagtattg 958
|||||||| ||| |||||| |||| ||||||||
Sbjct: 7870 ttctatcggtaaagacgttgtctctccagtattg 7837
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6106
Number of Sequences: 1807
Number of extensions: 6106
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)