BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD06RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1294 0.0
>3x_Contig1669
Length = 15503
Score = 1294 bits (653), Expect = 0.0
Identities = 719/736 (97%), Gaps = 4/736 (0%)
Strand = Plus / Minus
Query: 48 agacgctatcagaattgttcccagattggacaaatgatgatttaattgatttagtccgtg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6028 agacgctatcagaattgttcccagattggacaaatgatgatttaattgatttagtccgtg 5969
Query: 108 aatatgatgatctagaaaccatagttgataagataactactggagcagtgacaaaatggg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5968 aatatgatgatctagaaaccatagttgataagataactactggagcagtgacaaaatggg 5909
Query: 168 acgaagtgaagaaaccatctaaaaaggaaaagcctgcatcgcatatagaacaccaatctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5908 acgaagtgaagaaaccatctaaaaaggaaaagcctgcatcgcatatagaacaccaatctc 5849
Query: 228 atagttctcatcaacagctgcaacaacaagccgcatcacacctgngaccctgaagattct 287
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5848 atagttctcatcaacagctgcaacaacaagccgcatcacacctg-gaccctgaagattct 5790
Query: 288 ccttctctaataaatcaacatcattcgcatcaaagacaatctagatccacctctaagttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5789 ccttctctaataaatcaacatcattcgcatcaaagacaatctagatccacctctaagttc 5730
Query: 348 agtaataacagcgccaatggcaaatcagtgcaacaaagacagcaacaccagtcaaataat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5729 agtaataacagcgccaatggcaaatcagtgcaacaaagacagcaacaccagtcaaataat 5670
Query: 408 aaagataacaagaagcagccttcaaaggatagtttgaagcctgctccattaccatctaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5669 aaagataacaagaagcagccttcaaaggatagtttgaagcctgctccattaccatctaaa 5610
Query: 468 tctaacgctggtaataacgcggggtcttgggccgccgtattggcagataagataaaggct 527
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 5609 tctaacgctggtaataacgcggggtcttgggccgccgtattggcagaaaagaaaaaggct 5550
Query: 528 catgaaaagaagattgaccatacaaagtcgtctaatacaattgcacatgaatctactaat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5549 catgaaaagaagattgaccatacaaagtcgtctaatacaattgcacatgaatctactaat 5490
Query: 588 gaacaatctgaatctaatgaacataccgaaccatctgaagttgaagttgcacctgcccag 647
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5489 gaacaatctgaatctaatgaacataccgaaccaactgaagttgaagttgcacctgcccag 5430
Query: 648 nctgttgactctgcaccagaatctgtcagccatcaacattgcgcagaaatctga-tcaat 706
|||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct: 5429 cctgttgactctgcaccagaatctgtcagccatcaacat-gcgccagaatctgaatcaat 5371
Query: 707 tcgcaccacaaacggtgatttctaggccaaagaattgggctgacattgcaagcgccaaga 766
||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||
Sbjct: 5370 cgccaccacaaacggtgatt-ctaagccaaagagttgggctgacattgcaagcgcaaaga 5312
Query: 767 gcagacaaagacaact 782
||||||||||||||||
Sbjct: 5311 gcagacaaagacaact 5296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7046
Number of Sequences: 1807
Number of extensions: 7046
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)